Variant report

Variant	rs186475594
Chromosome Location	chr20:23847230-23847231
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv3336	chr20:23804081-23848943	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv833944	chr20:23806288-24021865	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv585730	chr20:23809681-23862844	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3342719	chr20:23846789-23847230	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3452059	chr20:23847147-23847282	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23841200-23847600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr20:23841400-23847400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr20:23847000-23847800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr20:23847000-23848200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr20:23847000-23848200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr20:23847000-23848400	Enhancers	Fetal Thymus	thymus
7	chr20:23847000-23848800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr20:23847000-23848800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr20:23847000-23849200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr20:23847000-23852400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr20:23847200-23847600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr20:23847200-23848800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr20:23847200-23849800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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