Variant report

Variant	rs186490978
Chromosome Location	chr3:135222180-135222181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv527433	chr3:135221504-135225249	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv518089	chr3:135221504-135232994	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135210600-135222600	Weak transcription	Psoas Muscle	Psoas
2	chr3:135221400-135222400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr3:135221400-135223400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:135221800-135222200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr3:135221800-135223000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:135222000-135222200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:135222000-135222400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr3:135222000-135222400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:135222000-135222400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:135222000-135222600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
11	chr3:135222000-135222800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr3:135222000-135222800	Flanking Active TSS	Fetal Brain Male	brain
13	chr3:135222000-135222800	Flanking Active TSS	Fetal Brain Female	brain
14	chr3:135222000-135223000	Flanking Active TSS	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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