Variant report

Variant	rs186509429
Chromosome Location	chr5:74812784-74812785
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr5:74812740-74812859	GM12878	blood:	n/a	n/a
2	POLR2A	chr5:74812772-74812853	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:74811981..74814673-chr5:74874113..74876597,2	K562	blood:
2	chr5:74811101..74813110-chr5:74815287..74817345,2	K562	blood:

Variant related genes	Relation type
COL4A3BP	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882193	chr5:74656175-74917862	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv882194	chr5:74656175-74946455	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv882195	chr5:74678937-74896798	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv882196	chr5:74678937-74917862	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv882197	chr5:74692776-74946455	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv882198	chr5:74736065-74896798	Strong transcription Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv882199	chr5:74757758-74946455	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	nsv882200	chr5:74781439-74830808	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
10	nsv882201	chr5:74787310-74890618	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
11	nsv882202	chr5:74808417-74946455	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
12	esv3385195	chr5:74810245-74843686	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv882203	chr5:74811497-74832919	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv882204	chr5:74811497-74856142	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv882205	chr5:74811497-74862921	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74808000-74814600	Weak transcription	Gastric	stomach
2	chr5:74808200-74814600	Weak transcription	Left Ventricle	heart
3	chr5:74808200-74814600	Weak transcription	Pancreas	Pancrea
4	chr5:74808200-74814800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:74808200-74817600	Weak transcription	Esophagus	oesophagus
6	chr5:74808600-74814600	Weak transcription	Right Ventricle	heart
7	chr5:74808600-74817600	Weak transcription	Thymus	Thymus
8	chr5:74808600-74819000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr5:74808800-74814400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr5:74808800-74814600	Weak transcription	Lung	lung
11	chr5:74808800-74816200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:74808800-74816200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr5:74808800-74817600	Weak transcription	Aorta	Aorta
14	chr5:74808800-74817600	Weak transcription	Fetal Thymus	thymus
15	chr5:74808800-74817800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:74808800-74849600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr5:74809000-74813000	Weak transcription	Fetal Brain Male	brain
18	chr5:74809000-74815600	Weak transcription	Fetal Intestine Large	intestine
19	chr5:74809000-74816200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr5:74809000-74816200	Weak transcription	Small Intestine	intestine
21	chr5:74809000-74819600	Weak transcription	Placenta	Placenta
22	chr5:74809000-74820000	Weak transcription	Colonic Mucosa	Colon
23	chr5:74809400-74814600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr5:74809400-74814600	Weak transcription	Fetal Intestine Small	intestine
25	chr5:74809400-74814600	Weak transcription	Right Atrium	heart
26	chr5:74809400-74814800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr5:74809400-74815200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr5:74809400-74815800	Weak transcription	Primary T cells from cord blood	blood
29	chr5:74809400-74816200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr5:74809400-74816200	Weak transcription	Ovary	ovary
31	chr5:74809400-74816400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr5:74809400-74816400	Weak transcription	Osteobl	bone
33	chr5:74809400-74817600	Weak transcription	HSMM	muscle
34	chr5:74809400-74817800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr5:74809400-74830600	Weak transcription	Fetal Kidney	kidney
36	chr5:74809600-74814800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr5:74809600-74814800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr5:74809600-74816200	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr5:74809600-74816200	Weak transcription	Liver	Liver
40	chr5:74809600-74816600	Weak transcription	NHDF-Ad	bronchial
41	chr5:74809600-74817600	Weak transcription	HMEC	breast
42	chr5:74809600-74820600	Weak transcription	Brain Angular Gyrus	brain
43	chr5:74809600-74830200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr5:74809600-74839400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr5:74809800-74814000	Weak transcription	NHEK	skin
46	chr5:74809800-74814600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr5:74809800-74815200	Weak transcription	K562	blood
48	chr5:74809800-74815400	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr5:74809800-74815600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr5:74809800-74816000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links