Variant report

Variant	rs186528146
Chromosome Location	chr11:24517938-24517939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3A	chr11:24517887-24519074	H1-hESC	embryonic stem cell:	n/a	chr11:24517970-24517979 chr11:24518886-24518899 chr11:24518623-24518632
2	POLR2A	chr11:24517880-24519103	H1-neurons	neurons:	n/a	n/a
3	REST	chr11:24517861-24519541	H1-neurons	neurons:	n/a	chr11:24518976-24518983 chr11:24518703-24518712
4	MAZ	chr11:24517782-24518819	IMR90	lung:	n/a	chr11:24518489-24518499
5	RAD21	chr11:24517881-24519463	SK-N-SH	brain:	n/a	chr11:24517948-24517957 chr11:24519038-24519048 chr11:24519037-24519050

Variant related genes	Relation type
LUZP2	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055026	chr11:24151133-24737122	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1037744	chr11:24174588-24737122	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv467755	chr11:24407381-24527958	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv553791	chr11:24407381-24527958	Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv897088	chr11:24419481-24543475	Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv553794	chr11:24435202-24537624	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1837793	chr11:24443570-24527958	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv897089	chr11:24477706-24545353	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv553819	chr11:24499370-24545353	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv469945	chr11:24515523-24545353	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24517200-24518800	Active TSS	Brain Angular Gyrus	brain
2	chr11:24517200-24519200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
3	chr11:24517200-24519600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
4	chr11:24517400-24518600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:24517400-24520000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
6	chr11:24517600-24518000	Active TSS	Fetal Brain Female	brain
7	chr11:24517600-24519400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr11:24517800-24518000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:24517800-24518000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
10	chr11:24517800-24518000	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:24517800-24518000	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
12	chr11:24517800-24518000	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:24517800-24518000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:24517800-24518000	Flanking Active TSS	Adipose Nuclei	Adipose
15	chr11:24517800-24518000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
16	chr11:24517800-24518000	Flanking Active TSS	Fetal Brain Male	brain
17	chr11:24517800-24518000	Enhancers	Fetal Heart	heart
18	chr11:24517800-24518000	Bivalent Enhancer	Fetal Intestine Large	intestine
19	chr11:24517800-24518000	Bivalent Enhancer	Fetal Intestine Small	intestine
20	chr11:24517800-24518000	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
21	chr11:24517800-24518000	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
22	chr11:24517800-24518000	Bivalent Enhancer	NHEK	skin
23	chr11:24517800-24518200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:24517800-24518200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr11:24517800-24518200	Flanking Active TSS	Brain Hippocampus Middle	brain
26	chr11:24517800-24518200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
27	chr11:24517800-24518200	Flanking Bivalent TSS/Enh	Fetal Lung	lung
28	chr11:24517800-24518200	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
29	chr11:24517800-24518200	Active TSS	Fetal Stomach	stomach
30	chr11:24517800-24518200	Bivalent/Poised TSS	NHDF-Ad	bronchial
31	chr11:24517800-24518400	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:24517800-24518400	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr11:24517800-24518400	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
34	chr11:24517800-24518800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:24517800-24518800	Bivalent/Poised TSS	Brain Substantia Nigra	brain
36	chr11:24517800-24519000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr11:24517800-24519000	Bivalent/Poised TSS	NHLF	lung
38	chr11:24517800-24519200	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
39	chr11:24517800-24519200	Active TSS	Right Ventricle	heart
40	chr11:24517800-24519400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
41	chr11:24517800-24519400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr11:24517800-24519400	Active TSS	Brain Cingulate Gyrus	brain
43	chr11:24517800-24519400	Bivalent/Poised TSS	NH-A	brain
44	chr11:24517800-24519600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
45	chr11:24517800-24519600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
46	chr11:24517800-24519600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
47	chr11:24517800-24519800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
48	chr11:24517800-24519800	Bivalent/Poised TSS	Brain Germinal Matrix	brain
49	chr11:24517800-24520200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell

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