Variant report

Variant	rs186536272
Chromosome Location	chr12:105743016-105743017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105742172..105744127-chr12:105746507..105748716,2	K562	blood:
2	chr12:105741772..105743921-chr12:105752449..105754219,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235162	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv510589	chr12:105670071-105743755	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv899500	chr12:105742674-105803028	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105725600-105747200	Weak transcription	Gastric	stomach
2	chr12:105729800-105749400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr12:105730600-105755400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr12:105734800-105744000	Weak transcription	Thymus	Thymus
5	chr12:105734800-105744000	Weak transcription	HSMMtube	muscle
6	chr12:105734800-105750200	Weak transcription	Primary T cells from cord blood	blood
7	chr12:105734800-105750800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr12:105734800-105776600	Weak transcription	Esophagus	oesophagus
9	chr12:105735000-105776600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr12:105735200-105750800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr12:105735400-105756800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr12:105735600-105743800	Weak transcription	Aorta	Aorta
13	chr12:105735600-105744000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr12:105735600-105744000	Weak transcription	NHEK	skin
15	chr12:105735600-105745400	Weak transcription	Fetal Thymus	thymus
16	chr12:105735600-105746200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr12:105735600-105749200	Weak transcription	HMEC	breast
18	chr12:105735600-105750600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr12:105735600-105753800	Weak transcription	Fetal Stomach	stomach
20	chr12:105735600-105766800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr12:105735600-105776600	Weak transcription	Fetal Intestine Small	intestine
22	chr12:105735800-105743200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr12:105736200-105745400	Weak transcription	Primary B cells from peripheral blood	blood
24	chr12:105736200-105749200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr12:105736600-105743800	Weak transcription	GM12878-XiMat	blood
26	chr12:105738000-105746000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr12:105738000-105752000	Weak transcription	Spleen	Spleen
28	chr12:105738200-105744000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr12:105738200-105744000	Weak transcription	HSMM	muscle
30	chr12:105738200-105745400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr12:105738200-105745400	Weak transcription	Psoas Muscle	Psoas
32	chr12:105738200-105745800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr12:105738200-105746000	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr12:105738200-105746400	Weak transcription	NH-A	brain
35	chr12:105738200-105750600	Weak transcription	Primary B cells from cord blood	blood
36	chr12:105739000-105745600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr12:105740800-105743400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr12:105740800-105744600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr12:105741000-105744000	Weak transcription	A549	lung
40	chr12:105741400-105743200	Enhancers	NHLF	lung
41	chr12:105741400-105746000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr12:105741600-105743400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr12:105741800-105744600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr12:105741800-105750800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr12:105742000-105745400	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr12:105742200-105743400	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr12:105742200-105743600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr12:105742400-105743200	Enhancers	Muscle Satellite Cultured Cells	--
49	chr12:105742400-105743400	Enhancers	Osteobl	bone
50	chr12:105742400-105743800	Genic enhancers	NHDF-Ad	bronchial

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