Variant report

Variant	rs186540396
Chromosome Location	chr9:117457592-117457593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117455344..117457782-chr9:117461706..117463500,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044374	chr9:116955841-117460150	Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
2	nsv615238	chr9:116958144-117458475	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
3	nsv831694	chr9:117328640-117502785	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv893766	chr9:117385992-117516418	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1042718	chr9:117435306-117488969	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv972444	chr9:117457193-117459000	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117452600-117457600	Enhancers	NHDF-Ad	bronchial
2	chr9:117453600-117457600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:117454000-117457600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:117454000-117457600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:117454000-117457600	Enhancers	HMEC	breast
6	chr9:117454000-117459000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr9:117454000-117459000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr9:117454200-117459600	Weak transcription	Hela-S3	cervix
9	chr9:117454400-117458200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr9:117454600-117458800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr9:117454600-117458800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr9:117454600-117459200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr9:117454800-117458800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr9:117454800-117459000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr9:117455000-117459000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr9:117455800-117457600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:117455800-117457600	Enhancers	HSMM	muscle
18	chr9:117456000-117457600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr9:117456000-117457600	Enhancers	NH-A	brain
20	chr9:117456200-117457600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:117456200-117460000	Weak transcription	Small Intestine	intestine
22	chr9:117457000-117457600	Flanking Active TSS	GM12878-XiMat	blood
23	chr9:117457200-117459000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:117457200-117459200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:117457200-117459200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:117457200-117459200	Weak transcription	NHLF	lung
27	chr9:117457400-117457600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr9:117457400-117458800	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr9:117457400-117459200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr9:117457400-117459200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr9:117457400-117459200	Weak transcription	NHEK	skin
32	chr9:117457400-117459200	Weak transcription	Osteobl	bone
33	chr9:117457400-117459600	Weak transcription	HSMMtube	muscle

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