Variant report

Variant	rs1865431
Chromosome Location	chr4:93773227-93773228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10856898	0.91[EUR][1000 genomes]
rs12499927	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12499975	0.92[EUR][1000 genomes]
rs12500035	0.82[EUR][1000 genomes]
rs12500547	0.84[EUR][1000 genomes]
rs12507379	0.82[EUR][1000 genomes]
rs12650408	0.85[GIH][hapmap]
rs1434782	0.83[EUR][1000 genomes]
rs17326345	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2033585	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2196236	0.82[EUR][1000 genomes]
rs6817811	0.90[AFR][1000 genomes]
rs6857301	0.87[EUR][1000 genomes]
rs72663577	0.91[EUR][1000 genomes]
rs72663579	0.88[EUR][1000 genomes]
rs892664	0.88[CEU][hapmap];0.98[GIH][hapmap];0.87[JPT][hapmap];0.83[LWK][hapmap];0.92[MEX][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003350	chr4:93566813-93821353	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1011652	chr4:93618181-93891388	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916948	chr4:93657711-93786768	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916371	chr4:93673026-93994807	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv427688	chr4:93680331-93830824	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv879611	chr4:93707288-93987251	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2760848	chr4:93746511-93804020	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1010290	chr4:93753135-93830001	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv879612	chr4:93761619-93969165	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:93758200-93802200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:93768400-93773400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:93768600-93773400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:93769400-93785000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:93772800-93773400	Enhancers	Fetal Intestine Small	intestine
6	chr4:93772800-93774400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:93773000-93773800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:93773200-93773800	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links