Variant report

Variant	rs186559567
Chromosome Location	chr17:67120377-67120378
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:67112395..67115325-chr17:67117156..67120723,3	K562	blood:

Variant related genes	Relation type
ENSG00000154262	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833526	chr17:66980758-67137034	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv470598	chr17:67081830-67212595	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv575930	chr17:67120025-67212031	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67077800-67137800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr17:67087000-67130400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr17:67091200-67131400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr17:67091600-67130000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr17:67092200-67137600	Weak transcription	Brain Anterior Caudate	brain
6	chr17:67095800-67131000	Weak transcription	Fetal Muscle Leg	muscle
7	chr17:67096200-67143400	Weak transcription	Psoas Muscle	Psoas
8	chr17:67096400-67134000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr17:67097000-67133800	Weak transcription	Colon Smooth Muscle	Colon
10	chr17:67099000-67131600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr17:67101200-67143400	Weak transcription	Pancreas	Pancrea
12	chr17:67106400-67131400	Weak transcription	Left Ventricle	heart
13	chr17:67109600-67129200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr17:67114600-67162800	Weak transcription	Brain Angular Gyrus	brain
15	chr17:67114800-67122200	Weak transcription	Adipose Nuclei	Adipose
16	chr17:67115600-67134000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr17:67115800-67121800	Weak transcription	NHDF-Ad	bronchial
18	chr17:67115800-67130600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr17:67117800-67130400	Weak transcription	Ovary	ovary
20	chr17:67119000-67123400	Weak transcription	Fetal Lung	lung
21	chr17:67119000-67131000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr17:67119400-67120600	Genic enhancers	Liver	Liver
23	chr17:67119600-67131600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr17:67119800-67121400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr17:67120000-67122200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr17:67120000-67138000	Weak transcription	Small Intestine	intestine

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