The 2.0 version of rSNPBase

Variant report

Variant rs186580981
Chromosome Location chr12:105743989-105743990
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:105725600-105747200 Weak transcription Gastric stomach
2 chr12:105729800-105749400 Weak transcription Placenta Amnion Placenta Amnion
3 chr12:105730600-105755400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr12:105734800-105744000 Weak transcription Thymus Thymus
5 chr12:105734800-105744000 Weak transcription HSMMtube muscle
6 chr12:105734800-105750200 Weak transcription Primary T cells from cord blood blood
7 chr12:105734800-105750800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
8 chr12:105734800-105776600 Weak transcription Esophagus oesophagus
9 chr12:105735000-105776600 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr12:105735200-105750800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
11 chr12:105735400-105756800 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr12:105735600-105744000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr12:105735600-105744000 Weak transcription NHEK skin
14 chr12:105735600-105745400 Weak transcription Fetal Thymus thymus
15 chr12:105735600-105746200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
16 chr12:105735600-105749200 Weak transcription HMEC breast
17 chr12:105735600-105750600 Weak transcription Primary T regulatory cells fromperipheralblood blood
18 chr12:105735600-105753800 Weak transcription Fetal Stomach stomach
19 chr12:105735600-105766800 Weak transcription Primary hematopoietic stem cells blood
20 chr12:105735600-105776600 Weak transcription Fetal Intestine Small intestine
21 chr12:105736200-105745400 Weak transcription Primary B cells from peripheral blood blood
22 chr12:105736200-105749200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr12:105738000-105746000 Weak transcription iPS-18 Cell Line embryonic stem cell
24 chr12:105738000-105752000 Weak transcription Spleen Spleen
25 chr12:105738200-105744000 Weak transcription Skeletal Muscle Female skeletal muscle
26 chr12:105738200-105744000 Weak transcription HSMM muscle
27 chr12:105738200-105745400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
28 chr12:105738200-105745400 Weak transcription Psoas Muscle Psoas
29 chr12:105738200-105745800 Weak transcription iPS-15b Cell Line embryonic stem cell
30 chr12:105738200-105746000 Weak transcription Pancreatic Islets Pancreatic Islet
31 chr12:105738200-105746400 Weak transcription NH-A brain
32 chr12:105738200-105750600 Weak transcription Primary B cells from cord blood blood
33 chr12:105739000-105745600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
34 chr12:105740800-105744600 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr12:105741000-105744000 Weak transcription A549 lung
36 chr12:105741400-105746000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
37 chr12:105741800-105744600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
38 chr12:105741800-105750800 Weak transcription Primary hematopoietic stem cells short term culture blood
39 chr12:105742000-105745400 Weak transcription Primary T cells fromperipheralblood blood
40 chr12:105742400-105744000 Enhancers Brain Germinal Matrix brain
41 chr12:105742400-105744600 Genic enhancers Dnd41 blood
42 chr12:105742600-105744600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr12:105742800-105744400 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
44 chr12:105742800-105744400 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
45 chr12:105742800-105744400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr12:105743200-105744000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr12:105743200-105744200 Weak transcription NHLF lung
48 chr12:105743200-105745400 Weak transcription Primary T killer naive cells fromperipheralblood blood
49 chr12:105743200-105746400 Weak transcription Muscle Satellite Cultured Cells --
50 chr12:105743400-105744000 Weak transcription Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015