Variant report

Variant	rs1866023
Chromosome Location	chr2:142524257-142524258
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1370335	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16847075	1.00[AMR][1000 genomes]
rs16847100	1.00[AMR][1000 genomes]
rs2118273	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58362402	1.00[AMR][1000 genomes]
rs7562174	0.86[YRI][hapmap]
rs7583921	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7593831	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv459663	chr2:142509570-142568465	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv583236	chr2:142509570-142568465	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1004379	chr2:142514657-142547597	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142523200-142524800	Enhancers	Dnd41	blood
2	chr2:142524000-142524800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr2:142524000-142525000	Enhancers	Brain Cingulate Gyrus	brain
4	chr2:142524000-142525400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr2:142524000-142525800	Enhancers	NH-A	brain
6	chr2:142524200-142524400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr2:142524200-142524800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr2:142524200-142524800	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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