Variant report

Variant	rs186656830
Chromosome Location	chrX:153832295-153832296
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chrX:153832181-153832687	SK-N-SH	brain:	n/a	n/a
2	FOS	chrX:153832236-153832908	MCF10A-Er-Src	breast:	n/a	chrX:153832451-153832462
3	JUND	chrX:153832182-153832714	MCF-7	breast:	n/a	chrX:153832451-153832462
4	STAT3	chrX:153832283-153832588	MCF10A-Er-Src	breast:	n/a	n/a
5	STAT3	chrX:153832263-153832800	Hela-S3	cervix:	n/a	chrX:153832718-153832725
6	SP1	chrX:153832152-153832803	HCT-116	colon:	n/a	n/a
7	TEAD4	chrX:153832218-153832710	ECC-1	luminal epithelium:	n/a	n/a
8	RFX5	chrX:153832273-153832737	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chrX:153832280-153832590	HCT-116	colon:	n/a	n/a
10	SMC3	chrX:153832227-153832785	Hela-S3	cervix:	n/a	n/a
11	TCF12	chrX:153832055-153832775	SK-N-SH	brain:	n/a	n/a
12	EP300	chrX:153832133-153832733	SK-N-SH	brain:	n/a	n/a
13	POLR2A	chrX:153832288-153832633	SK-N-SH	brain:	n/a	n/a
14	MAX	chrX:153832276-153832631	Hela-S3	cervix:	n/a	n/a
15	FOSL2	chrX:153832205-153832715	MCF-7	breast:	n/a	n/a
16	FOS	chrX:153832265-153832780	MCF10A-Er-Src	breast:	n/a	chrX:153832451-153832462
17	GATA3	chrX:153832153-153832774	SK-N-SH	brain:	n/a	n/a
18	FOS	chrX:153832214-153832758	MCF10A-Er-Src	breast:	n/a	chrX:153832451-153832462
19	STAT3	chrX:153832289-153832735	MCF10A-Er-Src	breast:	n/a	chrX:153832718-153832725
20	EP300	chrX:153832132-153832626	ECC-1	luminal epithelium:	n/a	n/a
21	MYC	chrX:153832149-153832930	MCF10A-Er-Src	breast:	n/a	chrX:153832876-153832885 chrX:153832875-153832886
22	MAX	chrX:153832275-153832700	Hela-S3	cervix:	n/a	n/a
23	GATA3	chrX:153832072-153832741	SK-N-SH	brain:	n/a	chrX:153832090-153832103 chrX:153832092-153832100
24	CHD2	chrX:153832295-153832643	Hela-S3	cervix:	n/a	n/a
25	USF2	chrX:153832255-153832632	Hela-S3	cervix:	n/a	n/a
26	FOS	chrX:153832275-153832615	HUVEC	blood vessel:	n/a	chrX:153832451-153832462
27	TEAD4	chrX:153832152-153832773	SK-N-SH	brain:	n/a	n/a
28	NFIC	chrX:153832149-153832805	SK-N-SH	brain:	n/a	n/a
29	FOSL2	chrX:153832270-153832766	MCF-7	breast:	n/a	n/a
30	FOSL2	chrX:153832167-153832708	A549	lung:	n/a	n/a
31	RCOR1	chrX:153832231-153832748	Hela-S3	cervix:	n/a	n/a
32	JUND	chrX:153831909-153832843	SK-N-SH	brain:	n/a	chrX:153832451-153832462
33	FOSL1	chrX:153832163-153832661	HCT-116	colon:	n/a	n/a
34	TEAD4	chrX:153832180-153832699	ECC-1	luminal epithelium:	n/a	n/a
35	FOS	chrX:153832273-153832644	Hela-S3	cervix:	n/a	chrX:153832451-153832462
36	TEAD4	chrX:153832172-153832683	HCT-116	colon:	n/a	n/a
37	TBP	chrX:153832294-153832714	Hela-S3	cervix:	n/a	n/a
38	STAT3	chrX:153832195-153832716	MCF10A-Er-Src	breast:	n/a	n/a
39	JUN	chrX:153832249-153832697	Hela-S3	cervix:	n/a	n/a
40	FOSL2	chrX:153832226-153832793	SK-N-SH	brain:	n/a	n/a
41	TCF7L2	chrX:153832289-153832633	Hela-S3	cervix:	n/a	n/a
42	TCF12	chrX:153832050-153832868	SK-N-SH	brain:	n/a	n/a
43	TEAD4	chrX:153832228-153832639	HCT-116	colon:	n/a	n/a
44	MYC	chrX:153832222-153832695	MCF10A-Er-Src	breast:	n/a	n/a
45	MAZ	chrX:153832244-153832622	Hela-S3	cervix:	n/a	n/a
46	ZKSCAN1	chrX:153832227-153832653	Hela-S3	cervix:	n/a	n/a
47	SP1	chrX:153832101-153832786	HCT-116	colon:	n/a	n/a
48	TCF12	chrX:153832115-153832662	ECC-1	luminal epithelium:	n/a	n/a
49	EP300	chrX:153832200-153832749	Hela-S3	cervix:	n/a	n/a
50	CEBPB	chrX:153832212-153832797	Hela-S3	cervix:	n/a	chrX:153832613-153832626

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:153824667..153827046-chrX:153830965..153832603,2	MCF-7	breast:
2	chrX:153774436..153776953-chrX:153831289..153833251,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232155	TF binding region
ENSG00000073009	Chromatin interaction
ENSG00000160211	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532962	chrX:153564946-153870337	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	199 gene(s)	inside rSNPs	diseases
2	nsv532964	chrX:153622940-153854307	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
3	nsv995104	chrX:153731421-153832724	Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
4	esv3648994	chrX:153829693-153919915	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv518228	chrX:153829693-153919915	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153828000-153833000	Enhancers	HSMMtube	muscle
2	chrX:153828400-153835000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chrX:153828600-153833400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chrX:153828800-153833200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chrX:153829400-153833000	Enhancers	HSMM	muscle
6	chrX:153829800-153836000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chrX:153830200-153833200	Enhancers	Hela-S3	cervix
8	chrX:153831000-153833000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chrX:153831000-153833200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chrX:153831200-153833200	Enhancers	HMEC	breast
11	chrX:153831600-153832600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chrX:153831600-153833000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chrX:153831600-153833000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chrX:153831600-153833000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chrX:153831600-153833000	Enhancers	NHEK	skin
16	chrX:153831800-153832600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chrX:153831800-153833000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chrX:153831800-153833000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chrX:153831800-153833000	Enhancers	Muscle Satellite Cultured Cells	--
20	chrX:153831800-153833000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chrX:153831800-153833000	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chrX:153831800-153833000	Enhancers	A549	lung
23	chrX:153832000-153832400	Enhancers	NHLF	lung
24	chrX:153832000-153832600	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chrX:153832000-153832800	Enhancers	HUVEC	blood vessel
26	chrX:153832000-153832800	Enhancers	Osteobl	bone
27	chrX:153832000-153833000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chrX:153832000-153833000	Enhancers	Placenta Amnion	Placenta Amnion
29	chrX:153832000-153833000	Enhancers	NH-A	brain
30	chrX:153832200-153832400	Bivalent Enhancer	K562	blood
31	chrX:153832200-153832600	Enhancers	Primary monocytes fromperipheralblood	blood
32	chrX:153832200-153832600	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links