Variant report

Variant	rs186722859
Chromosome Location	chr1:153672042-153672043
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BRCA1	chr1:153670709-153672144	Hela-S3	cervix:	n/a	n/a
2	SMARCC1	chr1:153669389-153672084	Hela-S3	cervix:	n/a	chr1:153671678-153671687
3	GATA3	chr1:153671165-153672100	SK-N-SH	brain:	n/a	n/a
4	STAT3	chr1:153671599-153672174	Hela-S3	cervix:	n/a	n/a
5	SMC3	chr1:153671537-153672113	Hela-S3	cervix:	n/a	n/a
6	CEBPB	chr1:153671622-153672121	K562	blood:	n/a	n/a
7	GTF2F1	chr1:153671546-153672114	Hela-S3	cervix:	n/a	n/a
8	TBP	chr1:153671602-153672129	Hela-S3	cervix:	n/a	n/a
9	CEBPB	chr1:153671509-153672042	A549	lung:	n/a	n/a
10	CEBPB	chr1:153671591-153672130	A549	lung:	n/a	n/a
11	CEBPB	chr1:153670708-153672206	Hela-S3	cervix:	n/a	n/a
12	JUND	chr1:153671477-153672124	Hela-S3	cervix:	n/a	chr1:153671677-153671689 chr1:153671679-153671687 chr1:153671675-153671686
13	RFX5	chr1:153670738-153672167	Hela-S3	cervix:	n/a	n/a
14	POLR2A	chr1:153671524-153672057	Hela-S3	cervix:	n/a	n/a
15	MAX	chr1:153671427-153672054	Hela-S3	cervix:	n/a	n/a
16	ELK1	chr1:153671659-153672202	Hela-S3	cervix:	n/a	n/a
17	EP300	chr1:153671567-153672073	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:153668419..153672342-chr1:153699600..153701905,4	MCF-7	breast:
2	chr1:153649692..153651457-chr1:153668885..153672459,3	K562	blood:
3	chr1:153643715..153646402-chr1:153669799..153672333,2	K562	blood:
4	chr1:153643715..153646402-chr1:153669451..153672333,3	K562	blood:
5	chr1:153669010..153673102-chr1:153699484..153702565,5	MCF-7	breast:
6	chr1:153669864..153672115-chr1:153679120..153682442,3	MCF-7	breast:

Variant related genes	Relation type
RN7SL372P	TF binding region
ENSG00000169418	Chromatin interaction
ENSG00000143624	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv547928	chr1:153612133-153714252	Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2830411	chr1:153613393-153725007	Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv1067771	chr1:153613593-153724866	Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	nsv530052	chr1:153613593-153724866	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
5	nsv1005818	chr1:153613597-153724980	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	nsv535173	chr1:153613597-153724980	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
7	nsv1007835	chr1:153613597-153729959	Genic enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
8	nsv535174	chr1:153613597-153729959	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
9	nsv1011897	chr1:153613597-153836703	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
10	nsv464028	chr1:153622220-153723037	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
11	nsv547929	chr1:153622220-153723037	Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
12	nsv999364	chr1:153622634-154419436	Strong transcription Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
13	nsv535175	chr1:153622634-154419436	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
14	nsv1001312	chr1:153622834-153724867	Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
15	nsv535176	chr1:153622834-153724867	Active TSS Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
16	esv16517	chr1:153671644-153695309	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv531892	chr1:153671910-153954090	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
18	nsv1002328	chr1:153672031-153718746	Flanking Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:153669200-153672400	Enhancers	A549	lung
2	chr1:153669400-153672200	Flanking Active TSS	Hela-S3	cervix
3	chr1:153669600-153672200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:153669600-153672200	Enhancers	Stomach Mucosa	stomach
5	chr1:153669600-153672600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:153670000-153672200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:153670000-153672400	Enhancers	NHDF-Ad	bronchial
8	chr1:153670600-153672200	Enhancers	Osteobl	bone
9	chr1:153670800-153672400	Enhancers	GM12878-XiMat	blood
10	chr1:153671000-153672200	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr1:153671000-153672200	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr1:153671000-153672600	Enhancers	Adipose Nuclei	Adipose
13	chr1:153671000-153672600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr1:153671200-153672200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr1:153671200-153672200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr1:153671200-153672200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr1:153671200-153672600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:153671200-153672600	Enhancers	K562	blood
19	chr1:153671200-153672800	Weak transcription	Primary B cells from cord blood	blood
20	chr1:153671400-153672200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:153671400-153672200	Enhancers	HMEC	breast
22	chr1:153671400-153672200	Enhancers	HSMM	muscle
23	chr1:153671400-153672200	Enhancers	NHEK	skin
24	chr1:153671400-153672400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:153671600-153672200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:153671600-153678200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr1:153671800-153672400	Enhancers	HUVEC	blood vessel
28	chr1:153672000-153674800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr1:153672000-153675200	Weak transcription	Right Atrium	heart

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