Variant report

Variant	rs186725326
Chromosome Location	chrX:73564152-73564153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:128)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:128 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chrX:73563829-73564227	IMR90	lung:	n/a	n/a
2	CTCF	chrX:73563812-73564199	A549	lung:	n/a	n/a
3	CTCF	chrX:73564020-73564170	HUVEC	blood vessel:	n/a	n/a
4	CTCF	chrX:73563936-73564152	GM13977	blood:	n/a	n/a
5	RAD21	chrX:73563890-73564192	GM12878	blood:	n/a	n/a
6	CTCF	chrX:73563902-73564163	MCF-7	breast:	n/a	n/a
7	EP300	chrX:73563653-73564185	A549	lung:	n/a	n/a
8	RAD21	chrX:73563838-73564274	A549	lung:	n/a	n/a
9	STAT3	chrX:73563943-73564198	GM12878	blood:	n/a	n/a
10	SPI1	chrX:73563705-73564178	GM12878	blood:	n/a	n/a
11	CTCF	chrX:73564040-73564190	HAc	cerebellar:	n/a	n/a
12	CTCF	chrX:73564060-73564210	A549	lung:	n/a	n/a
13	CTCF	chrX:73563861-73564277	A549	lung:	n/a	n/a
14	RAD21	chrX:73563802-73564299	HCT-116	colon:	n/a	n/a
15	CUX1	chrX:73563967-73564172	GM12878	blood:	n/a	chrX:73564099-73564115
16	TBP	chrX:73563757-73564169	Hela-S3	cervix:	n/a	n/a
17	RAD21	chrX:73563833-73564228	GM12878	blood:	n/a	n/a
18	CTCF	chrX:73563912-73564197	Pancreas_OC	pancreas:	n/a	n/a
19	RAD21	chrX:73563740-73564249	H1-hESC	embryonic stem cell:	n/a	n/a
20	CTCF	chrX:73563784-73564282	HCT-116	colon:	n/a	n/a
21	RAD21	chrX:73563860-73564166	GM12878	blood:	n/a	n/a
22	GATA3	chrX:73563562-73564316	A549	lung:	n/a	n/a
23	CEBPB	chrX:73563699-73564161	A549	lung:	n/a	n/a
24	RAD21	chrX:73563809-73564255	ECC-1	luminal epithelium:	n/a	n/a
25	SMC3	chrX:73563627-73564590	SK-N-SH	brain:	n/a	n/a
26	ZNF384	chrX:73563866-73564208	K562	blood:	n/a	n/a
27	CTCF	chrX:73563914-73564165	K562	blood:	n/a	n/a
28	ZNF143	chrX:73563846-73564184	H1-hESC	embryonic stem cell:	n/a	n/a
29	CTCF	chrX:73563923-73564152	HepG2	liver:	n/a	n/a
30	RUNX3	chrX:73563802-73564218	GM12878	blood:	n/a	n/a
31	CTCF	chrX:73563928-73564156	GM10248	blood:	n/a	n/a
32	SPI1	chrX:73563805-73564218	HL-60	blood:	n/a	n/a
33	RFX5	chrX:73563817-73564187	Hela-S3	cervix:	n/a	n/a
34	NFIC	chrX:73563716-73564177	GM12878	blood:	n/a	n/a
35	CTCF	chrX:73563916-73564181	HUVEC	blood vessel:	n/a	n/a
36	CTCF	chrX:73563920-73564167	LNCaP	prostate:	n/a	n/a
37	SMC3	chrX:73563775-73564306	Hela-S3	cervix:	n/a	n/a
38	RAD21	chrX:73563799-73564244	H1-hESC	embryonic stem cell:	n/a	n/a
39	TBL1XR1	chrX:73563955-73564201	GM12878	blood:	n/a	n/a
40	CTCF	chrX:73563916-73564194	Medullo	brain:	n/a	n/a
41	NFIC	chrX:73563827-73564240	SK-N-SH	brain:	n/a	n/a
42	NFIC	chrX:73563845-73564349	ECC-1	luminal epithelium:	n/a	n/a
43	GATA3	chrX:73563674-73564202	MCF-7	breast:	n/a	n/a
44	ZNF263	chrX:73563804-73564280	HEK293-T-REx	kidney:	n/a	n/a
45	CTCF	chrX:73563930-73564190	Lung_OC	lung:	n/a	n/a
46	CTCF	chrX:73563870-73564170	K562	blood:	n/a	n/a
47	CTCF	chrX:73564100-73564250	WI-38	lung:	n/a	n/a
48	RAD21	chrX:73563621-73564473	SK-N-SH	brain:	n/a	n/a
49	MAZ	chrX:73563881-73564176	GM12878	blood:	n/a	n/a
50	POLR2A	chrX:73563641-73564244	PANC-1	pancreas:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:73075052..73075793-chrX:73563582..73564389,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000226515	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364045	chrX:72896383-73699363	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	301 gene(s)	inside rSNPs	diseases
2	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv520605	chrX:73549327-73569476	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2830082	chrX:73564051-73635867	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73562600-73564200	Enhancers	Stomach Mucosa	stomach
2	chrX:73562600-73564600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chrX:73562800-73564600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chrX:73562800-73564600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chrX:73562800-73564600	Enhancers	Hela-S3	cervix
6	chrX:73563200-73564400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chrX:73563200-73564600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chrX:73563200-73564600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chrX:73563200-73564600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chrX:73563400-73564200	Enhancers	Adipose Nuclei	Adipose
11	chrX:73563400-73564200	Enhancers	Osteobl	bone
12	chrX:73563600-73564200	Enhancers	Monocytes-CD14+_RO01746	blood
13	chrX:73563600-73564600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chrX:73563600-73568800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chrX:73563800-73564400	Enhancers	Primary B cells from peripheral blood	blood
16	chrX:73563800-73564400	Enhancers	A549	lung
17	chrX:73564000-73564400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chrX:73564000-73565400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chrX:73564000-73565600	Weak transcription	Primary hematopoietic stem cells	blood

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