Variant report

Variant	rs186777720
Chromosome Location	chr17:37773405-37773406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr17:37773375-37775120	SK-N-SH	brain:	n/a	n/a
2	MAX	chr17:37773322-37775248	HCT-116	colon:	n/a	chr17:37774569-37774579 chr17:37774548-37774558 chr17:37774166-37774176 chr17:37774889-37774899 chr17:37773959-37773969 chr17:37774398-37774407 chr17:37774297-37774306 chr17:37774115-37774126
3	TCF12	chr17:37773205-37773964	A549	lung:	n/a	n/a
4	MAX	chr17:37773369-37775395	A549	lung:	n/a	chr17:37774569-37774579 chr17:37774548-37774558 chr17:37774166-37774176 chr17:37774889-37774899 chr17:37773959-37773969 chr17:37774398-37774407 chr17:37774297-37774306 chr17:37774115-37774126

No.	Distal block	Cell Line	Cell type
1	chr17:37772840..37775144-chr17:37791860..37794775,2	MCF-7	breast:
2	chr17:37772115..37773801-chr17:37825160..37827936,2	K562	blood:
3	chr17:37768363..37771309-chr17:37772118..37774468,3	K562	blood:
4	chr17:37763822..37767125-chr17:37772337..37774939,3	MCF-7	breast:
5	chr17:37773259..37775797-chr17:37912370..37914095,2	MCF-7	breast:
6	chr17:37773404..37776321-chr17:37819728..37822241,2	MCF-7	breast:
7	chr17:37769208..37773729-chr17:37777189..37781252,6	K562	blood:

Variant related genes	Relation type
ENSG00000214546	TF binding region
ENSG00000171532	Chromatin interaction
ENSG00000131748	Chromatin interaction
ENSG00000173991	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
2	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
3	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
4	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
5	nsv833442	chr17:37692880-37861291	Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
6	nsv521294	chr17:37694709-37804858	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv908205	chr17:37709422-37830900	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv908206	chr17:37709422-37866005	Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
9	nsv908207	chr17:37709422-37922259	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
10	nsv833443	chr17:37725640-37882864	Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
11	nsv908208	chr17:37749259-37781849	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv908209	chr17:37749259-37790340	Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv908210	chr17:37761202-37781849	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
14	nsv908211	chr17:37765047-37782410	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	nsv908212	chr17:37765047-37790340	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
16	nsv457738	chr17:37770005-37831035	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
17	nsv574991	chr17:37770005-37831035	Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
18	esv3391098	chr17:37773251-37775799	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37763600-37773600	Weak transcription	Gastric	stomach
2	chr17:37768000-37773600	Weak transcription	Right Atrium	heart
3	chr17:37771800-37776200	Enhancers	Fetal Brain Male	brain
4	chr17:37773000-37773600	Bivalent Enhancer	Brain Germinal Matrix	brain
5	chr17:37773200-37773600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
6	chr17:37773200-37773600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
7	chr17:37773200-37773600	Enhancers	Spleen	Spleen
8	chr17:37773200-37773800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
9	chr17:37773400-37773600	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
10	chr17:37773400-37773600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr17:37773400-37773600	Bivalent Enhancer	Primary T cells from cord blood	blood
12	chr17:37773400-37773600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr17:37773400-37773600	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr17:37773400-37773600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
15	chr17:37773400-37773600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr17:37773400-37773600	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
17	chr17:37773400-37773600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr17:37773400-37773600	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
19	chr17:37773400-37773600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr17:37773400-37773600	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr17:37773400-37773600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr17:37773400-37773600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr17:37773400-37773600	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
24	chr17:37773400-37773600	Enhancers	Adipose Nuclei	Adipose
25	chr17:37773400-37773600	Bivalent Enhancer	Brain Cingulate Gyrus	brain
26	chr17:37773400-37773600	Bivalent Enhancer	Duodenum Mucosa	Duodenum
27	chr17:37773400-37773600	Bivalent Enhancer	Fetal Heart	heart
28	chr17:37773400-37773600	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
29	chr17:37773400-37773600	Enhancers	Right Ventricle	heart
30	chr17:37773400-37773600	Bivalent Enhancer	Dnd41	blood
31	chr17:37773400-37773800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr17:37773400-37773800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
33	chr17:37773400-37773800	Enhancers	Primary B cells from cord blood	blood
34	chr17:37773400-37773800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr17:37773400-37773800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
36	chr17:37773400-37773800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
37	chr17:37773400-37773800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr17:37773400-37773800	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
39	chr17:37773400-37773800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
40	chr17:37773400-37773800	Bivalent Enhancer	Fetal Thymus	thymus
41	chr17:37773400-37773800	Enhancers	Left Ventricle	heart
42	chr17:37773400-37773800	Enhancers	Ovary	ovary
43	chr17:37773400-37773800	Bivalent Enhancer	HUVEC	blood vessel
44	chr17:37773400-37774000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
45	chr17:37773400-37774000	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
46	chr17:37773400-37774000	Flanking Active TSS	Fetal Brain Female	brain
47	chr17:37773400-37774000	Flanking Active TSS	Hela-S3	cervix
48	chr17:37773400-37775200	Bivalent/Poised TSS	NHEK	skin

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