Variant report

Variant	rs186782260
Chromosome Location	chr3:28632208-28632209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZCWPW2-1	chr3:28632042-28632276	XLOC_002605

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1015015	chr3:28461972-28728494	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv916364	chr3:28468275-29146280	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv590010	chr3:28469830-28727214	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv524090	chr3:28631124-28645278	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28628800-28633600	Weak transcription	Brain Substantia Nigra	brain
2	chr3:28631000-28632400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:28631200-28634000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:28631400-28632400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:28631600-28632600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:28631600-28632800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:28631600-28632800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:28631600-28633000	Enhancers	HSMM	muscle
9	chr3:28631800-28632400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:28631800-28632600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr3:28631800-28632600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr3:28631800-28632600	Enhancers	Osteobl	bone
13	chr3:28632000-28632400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:28632000-28632600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr3:28632000-28632600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr3:28632000-28632600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr3:28632000-28632600	Weak transcription	Aorta	Aorta
18	chr3:28632200-28632400	Enhancers	Brain Anterior Caudate	brain
19	chr3:28632200-28632400	Flanking Active TSS	NHLF	lung
20	chr3:28632200-28632800	Enhancers	HSMMtube	muscle
21	chr3:28632200-28632800	Enhancers	NH-A	brain

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