Variant report

Variant	rs1868900
Chromosome Location	chr2:173505225-173505226
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173501713..173506948-chr2:173507663..173511952,6	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1451450	1.00[EUR][1000 genomes]
rs16860857	1.00[EUR][1000 genomes]
rs57168481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59872425	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2760591	chr2:173396905-173719520	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv583665	chr2:173460640-173643087	Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv2762962	chr2:173493078-173527311	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173462200-173507400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr2:173489200-173507200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:173494600-173510200	Weak transcription	Primary T cells from cord blood	blood
4	chr2:173499800-173513000	Weak transcription	Pancreas	Pancrea
5	chr2:173503800-173506000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:173503800-173506200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:173504000-173505600	Enhancers	NH-A	brain
8	chr2:173504200-173505400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:173504200-173505400	Enhancers	NHEK	skin
10	chr2:173504200-173505600	Enhancers	NHLF	lung
11	chr2:173504400-173505400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr2:173504400-173505400	Enhancers	HSMM	muscle
13	chr2:173504600-173505400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:173504600-173505400	Enhancers	Adipose Nuclei	Adipose
15	chr2:173504800-173507800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:173505000-173505600	Enhancers	Fetal Stomach	stomach
17	chr2:173505000-173512000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:173505200-173505400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr2:173505200-173505600	Enhancers	Fetal Heart	heart
20	chr2:173505200-173507400	Weak transcription	HMEC	breast
21	chr2:173505200-173507800	Weak transcription	Osteobl	bone
22	chr2:173505200-173509000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr2:173505200-173511200	Weak transcription	NHDF-Ad	bronchial

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