Variant report

Variant	rs186916363
Chromosome Location	chr16:52343162-52343163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv1066719	chr16:52294981-53141905	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv827651	chr16:52304029-52373509	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3331137	chr16:52342872-52343371	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52341200-52344200	Enhancers	Fetal Brain Male	brain
2	chr16:52341600-52344400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr16:52341600-52345000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr16:52341600-52348000	Weak transcription	Fetal Lung	lung
5	chr16:52342000-52344600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr16:52342000-52344800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr16:52342400-52344400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr16:52342400-52344600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr16:52342400-52349800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr16:52342600-52344600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr16:52342800-52344400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr16:52343000-52344600	Enhancers	Brain Germinal Matrix	brain
13	chr16:52343000-52345000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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