Variant report

Variant	rs186924586
Chromosome Location	chr1:172255231-172255232
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172227773..172230310-chr1:172254726..172257439,2	MCF-7	breast:
2	chr1:172253395..172255527-chr1:172290385..172292894,2	MCF-7	breast:
3	chr1:172248264..172251646-chr1:172254476..172256076,3	K562	blood:
4	chr1:172230387..172232137-chr1:172254891..172256764,2	K562	blood:
5	chr1:172250146..172252710-chr1:172254053..172256076,2	K562	blood:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006542	chr1:172253765-172304690	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172239000-172262000	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:172247800-172255800	Weak transcription	Left Ventricle	heart
3	chr1:172247800-172256000	Weak transcription	Brain Angular Gyrus	brain
4	chr1:172248200-172255400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:172248200-172255400	Weak transcription	HSMM	muscle
6	chr1:172248200-172255400	Weak transcription	NHLF	lung
7	chr1:172248200-172255800	Weak transcription	Aorta	Aorta
8	chr1:172249200-172255400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:172249200-172255600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:172249400-172256000	Weak transcription	Esophagus	oesophagus
11	chr1:172251800-172257000	Weak transcription	Right Ventricle	heart
12	chr1:172253000-172257200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:172254200-172255600	Weak transcription	Colon Smooth Muscle	Colon
14	chr1:172254400-172255800	Weak transcription	Ovary	ovary
15	chr1:172254600-172255800	Weak transcription	Right Atrium	heart
16	chr1:172254800-172255400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:172254800-172256000	Weak transcription	Psoas Muscle	Psoas
18	chr1:172254800-172257200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:172254800-172258400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:172255000-172255400	Enhancers	NHDF-Ad	bronchial
21	chr1:172255000-172256600	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr1:172255000-172256600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr1:172255200-172256400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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