Variant report

Variant	rs187008597
Chromosome Location	chr15:59849266-59849267
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv527754	chr15:59848471-59855226	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59841600-59861600	Weak transcription	Gastric	stomach
2	chr15:59843600-59851200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr15:59847600-59849400	Enhancers	Small Intestine	intestine
4	chr15:59848200-59849400	Bivalent Enhancer	HepG2	liver
5	chr15:59848200-59850200	Enhancers	K562	blood
6	chr15:59848400-59850200	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr15:59848400-59851000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:59848400-59851000	Weak transcription	Osteobl	bone
9	chr15:59848600-59850200	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr15:59848800-59850600	Weak transcription	Fetal Intestine Small	intestine
11	chr15:59848800-59850600	Weak transcription	A549	lung
12	chr15:59848800-59851200	Enhancers	Hela-S3	cervix
13	chr15:59848800-59851400	Weak transcription	Stomach Mucosa	stomach
14	chr15:59848800-59857600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr15:59849000-59850800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:59849000-59853600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr15:59849200-59850600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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