Variant report

Variant	rs1870099
Chromosome Location	chr10:28537469-28537470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28537244..28539673-chr10:28551271..28553158,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1673231	1.00[AFR][1000 genomes]
rs1892395	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28519000-28552000	Weak transcription	Fetal Stomach	stomach
2	chr10:28521200-28538600	Weak transcription	Left Ventricle	heart
3	chr10:28521800-28544400	Weak transcription	Pancreas	Pancrea
4	chr10:28527600-28539600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:28532400-28541200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:28535600-28538200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr10:28535800-28541200	Weak transcription	Psoas Muscle	Psoas
8	chr10:28535800-28551600	Weak transcription	Fetal Intestine Small	intestine
9	chr10:28536400-28537800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:28536600-28537600	Enhancers	Primary T cells from cord blood	blood
11	chr10:28536600-28537600	Enhancers	HSMM	muscle
12	chr10:28536600-28538000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:28536600-28538000	Enhancers	HMEC	breast
14	chr10:28536800-28537600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:28536800-28537800	Enhancers	Primary B cells from cord blood	blood
16	chr10:28536800-28537800	Enhancers	Primary hematopoietic stem cells	blood
17	chr10:28536800-28538000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:28536800-28538800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr10:28537000-28537600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:28537000-28537600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr10:28537000-28537600	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr10:28537000-28537600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:28537000-28537600	Enhancers	Aorta	Aorta
24	chr10:28537000-28537600	Enhancers	Fetal Thymus	thymus
25	chr10:28537000-28537600	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr10:28537000-28537600	Enhancers	HSMMtube	muscle
27	chr10:28537000-28537600	Enhancers	NH-A	brain
28	chr10:28537000-28537800	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr10:28537000-28537800	Enhancers	Primary T cells fromperipheralblood	blood
30	chr10:28537000-28537800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr10:28537000-28537800	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr10:28537000-28537800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr10:28537000-28537800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr10:28537000-28537800	Enhancers	Esophagus	oesophagus
35	chr10:28537200-28537600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:28537200-28537600	Enhancers	Primary B cells from peripheral blood	blood
37	chr10:28537200-28537600	Enhancers	Fetal Muscle Leg	muscle
38	chr10:28537200-28537800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
39	chr10:28537200-28537800	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr10:28537200-28537800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr10:28537400-28537600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr10:28537400-28537600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:28537400-28537600	Flanking Active TSS	NHEK	skin
44	chr10:28537400-28537800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:28537400-28537800	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr10:28537400-28538400	Weak transcription	Right Atrium	heart
47	chr10:28537400-28538400	Weak transcription	Right Ventricle	heart
48	chr10:28537400-28552600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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