Variant report

Variant	rs187071273
Chromosome Location	chr8:20056159-20056160
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:20047045..20049449-chr8:20055849..20058080,2	K562	blood:
2	chr8:20036475..20038568-chr8:20054692..20056965,2	MCF-7	breast:
3	chr8:19800611..19802825-chr8:20055037..20057972,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000036565	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1015598	chr8:19963102-20088510	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv539523	chr8:19963102-20088510	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv6107	chr8:20056154-20100794	Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20053800-20056400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr8:20054000-20056200	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr8:20054000-20056200	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr8:20054000-20056200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:20054000-20056200	Active TSS	Brain Substantia Nigra	brain
6	chr8:20054000-20056400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:20054000-20057000	Active TSS	Brain Angular Gyrus	brain
8	chr8:20054000-20057000	Active TSS	Brain Cingulate Gyrus	brain
9	chr8:20054000-20057000	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr8:20054000-20057000	Active TSS	Stomach Smooth Muscle	stomach
11	chr8:20054200-20056200	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr8:20054200-20056200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
13	chr8:20054200-20056200	Active TSS	Right Ventricle	heart
14	chr8:20054200-20056400	Active TSS	Ovary	ovary
15	chr8:20054200-20056800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr8:20054200-20056800	Active TSS	Right Atrium	heart
17	chr8:20054200-20057000	Active TSS	HSMMtube	muscle
18	chr8:20054400-20056200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
19	chr8:20054400-20056400	Active TSS	Left Ventricle	heart
20	chr8:20054400-20056400	Active TSS	Pancreas	Pancrea
21	chr8:20054400-20056400	Active TSS	NHDF-Ad	bronchial
22	chr8:20054400-20056600	Active TSS	Aorta	Aorta
23	chr8:20054400-20056600	Active TSS	Fetal Intestine Small	intestine
24	chr8:20054400-20056600	Active TSS	Psoas Muscle	Psoas
25	chr8:20054400-20056800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr8:20054400-20057000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr8:20054400-20057000	Active TSS	HSMM	muscle
28	chr8:20054400-20057200	Active TSS	Lung	lung
29	chr8:20054400-20057400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:20054400-20058400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr8:20054600-20056200	Active TSS	GM12878-XiMat	blood
32	chr8:20054600-20056200	Active TSS	K562	blood
33	chr8:20054600-20056400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr8:20054600-20056400	Active TSS	Muscle Satellite Cultured Cells	--
35	chr8:20054600-20056400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr8:20054600-20056400	Active TSS	Rectal Smooth Muscle	rectum
37	chr8:20054600-20056400	Active TSS	Monocytes-CD14+_RO01746	blood
38	chr8:20054600-20056600	Active TSS	Primary monocytes fromperipheralblood	blood
39	chr8:20054600-20056800	Active TSS	Brain Hippocampus Middle	brain
40	chr8:20054600-20056800	Active TSS	Fetal Kidney	kidney
41	chr8:20054600-20056800	Active TSS	NHLF	lung
42	chr8:20054600-20057600	Active TSS	Fetal Intestine Large	intestine
43	chr8:20054600-20057800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr8:20054800-20056200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr8:20054800-20056600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr8:20055000-20056400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
47	chr8:20055200-20056400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
48	chr8:20055200-20056600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr8:20055200-20057000	Flanking Active TSS	Primary B cells from cord blood	blood
50	chr8:20055200-20057000	Flanking Active TSS	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links