Variant report

Variant	rs187121
Chromosome Location	chr12:30489180-30489181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10160883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10466816	1.00[EUR][1000 genomes]
rs11050813	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12302141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12310979	1.00[EUR][1000 genomes]
rs12311468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12311583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1366937	1.00[EUR][1000 genomes]
rs16905931	1.00[EUR][1000 genomes]
rs1864313	1.00[EUR][1000 genomes]
rs2564555	1.00[EUR][1000 genomes]
rs2564557	1.00[EUR][1000 genomes]
rs2564558	1.00[EUR][1000 genomes]
rs28852826	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs354139	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56800276	0.83[AMR][1000 genomes]
rs58124818	0.83[AMR][1000 genomes]
rs58428803	1.00[EUR][1000 genomes]
rs6487890	1.00[EUR][1000 genomes]
rs666917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280285	1.00[EUR][1000 genomes]
rs73280289	1.00[EUR][1000 genomes]
rs73280293	1.00[EUR][1000 genomes]
rs74081272	0.83[AMR][1000 genomes]
rs7965161	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7973419	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832360	chr12:30393329-30555693	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv558013	chr12:30478371-30491382	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv558014	chr12:30478371-30492671	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30484600-30490400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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