Variant report

Variant	rs187124
Chromosome Location	chr2:54930891-54930892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:54929658..54932247-chr2:54948356..54951858,3	K562	blood:
2	chr2:54929858..54931983-chr2:54949708..54952359,2	MCF-7	breast:
3	chr2:54748253..54750106-chr2:54930790..54932794,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214595	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10191922	0.92[ASN][1000 genomes]
rs168503	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs168506	0.90[ASN][1000 genomes]
rs168507	0.86[EUR][1000 genomes]
rs168508	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs171350	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17416806	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs181348	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1821138	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs191628	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2567835	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2931463	0.86[ASN][1000 genomes]
rs2941591	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2971875	0.87[EUR][1000 genomes]
rs2971889	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs354187	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs354195	0.83[EUR][1000 genomes]
rs354209	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs354213	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs354214	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs354223	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs354224	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs354226	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs354228	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs354231	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs354236	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs354237	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs354238	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs354243	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33638	chr2:54765256-55109455	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv582024	chr2:54894649-54999712	Active TSS Bivalent Enhancer Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs187124	EML6	cis	Artery Tibial	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54922400-54935800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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