Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1045162	0.90[JPT][hapmap]
rs12600703	0.86[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs12602058	0.85[JPT][hapmap]
rs12943067	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12946114	0.85[EUR][1000 genomes]
rs17770614	0.90[JPT][hapmap]
rs2291034	0.90[JPT][hapmap]
rs2364326	0.85[JPT][hapmap]
rs4985827	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4985959	0.96[CEU][hapmap];0.95[JPT][hapmap]
rs4985963	0.96[CEU][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs4985967	0.85[EUR][1000 genomes]
rs4985969	0.90[JPT][hapmap]
rs4985975	0.89[ASN][1000 genomes]
rs6587111	0.83[EUR][1000 genomes]
rs6587114	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs719093	0.90[JPT][hapmap]
rs7209129	0.96[CEU][hapmap];0.95[JPT][hapmap]
rs899340	0.96[CEU][hapmap];0.95[JPT][hapmap]
rs9911289	0.96[CEU][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949097	chr17:20801739-21406355	Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv529759	chr17:20839079-21529632	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1871276	FAM27L	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:20967400-20973000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr17:20968400-20970400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr17:20969000-20969200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr17:20969000-20969200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr17:20969000-20970200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr17:20969000-20970400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr17:20969000-20970400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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