Variant report

Variant	rs187135974
Chromosome Location	chrX:64155048-64155049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830378	chrX:63523802-64234414	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv817451	chrX:64049597-64916072	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv3431143	chrX:64153980-64192703	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	n/a
4	esv3447048	chrX:64153980-64196277	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64132200-64155200	Weak transcription	Small Intestine	intestine
2	chrX:64152600-64155200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chrX:64153000-64155200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chrX:64153200-64155600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chrX:64153400-64155400	ZNF genes & repeats	Dnd41	blood
6	chrX:64153600-64155400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
7	chrX:64153600-64156000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chrX:64153600-64156000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
9	chrX:64153600-64156200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chrX:64153800-64155200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
11	chrX:64153800-64155400	ZNF genes & repeats	Aorta	Aorta
12	chrX:64153800-64155600	ZNF genes & repeats	Ovary	ovary
13	chrX:64154200-64155400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
14	chrX:64154600-64155600	ZNF genes & repeats	Fetal Stomach	stomach
15	chrX:64154800-64155400	ZNF genes & repeats	Thymus	Thymus
16	chrX:64155000-64155800	ZNF genes & repeats	Brain Hippocampus Middle	brain
17	chrX:64155000-64156000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links