Variant report

Variant	rs187139142
Chromosome Location	chr19:41962677-41962678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATP5SL-1	chr19:41962496-41962828	ENSG00000267107.2
2	lnc-ATP5SL-1	chr19:41962521-41962828	ENSG00000267107.2

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519523	chr19:41962486-42001210	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1061157	chr19:41962486-42007875	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv510767	chr19:41962486-42049165	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv911770	chr19:41962486-42066279	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv911771	chr19:41962486-42085873	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41955800-41963000	Weak transcription	Fetal Intestine Large	intestine
2	chr19:41961200-41963800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr19:41961400-41962800	Enhancers	Adipose Nuclei	Adipose
4	chr19:41961600-41962800	Bivalent Enhancer	Fetal Muscle Leg	muscle
5	chr19:41961600-41962800	Enhancers	Left Ventricle	heart
6	chr19:41961600-41962800	Enhancers	Spleen	Spleen
7	chr19:41961800-41962800	Enhancers	Fetal Lung	lung
8	chr19:41962000-41962800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr19:41962000-41962800	Enhancers	Ovary	ovary
10	chr19:41962000-41962800	Enhancers	Right Atrium	heart
11	chr19:41962200-41962800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr19:41962200-41963000	Flanking Active TSS	HUVEC	blood vessel
13	chr19:41962200-41964200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr19:41962400-41962800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr19:41962400-41963800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr19:41962400-41964000	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr19:41962400-41964200	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr19:41962400-41964200	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr19:41962600-41962800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr19:41962600-41962800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr19:41962600-41963000	Enhancers	Fetal Thymus	thymus
22	chr19:41962600-41963200	Enhancers	Primary T cells fromperipheralblood	blood
23	chr19:41962600-41963600	Flanking Active TSS	GM12878-XiMat	blood
24	chr19:41962600-41964000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr19:41962600-41964000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr19:41962600-41964200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr19:41962600-41964400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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