Variant report

Variant	rs1871415
Chromosome Location	chr12:58019197-58019198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000166987	Chromatin interaction
ENSG00000240771	Chromatin interaction
ENSG00000208028	Chromatin interaction
ENSG00000135502	Chromatin interaction
ENSG00000257342	Chromatin interaction
ENSG00000135506	Chromatin interaction
ENSG00000224713	Chromatin interaction
ENSG00000175197	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1564375	1.00[AFR][1000 genomes]
rs17119801	1.00[AFR][1000 genomes]
rs2372489	1.00[AMR][1000 genomes]
rs238525	1.00[AMR][1000 genomes]
rs238526	1.00[AMR][1000 genomes]
rs238530	1.00[AMR][1000 genomes]
rs34987074	1.00[AFR][1000 genomes]
rs7958927	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038741	chr12:57877355-58174506	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
2	nsv541503	chr12:57877355-58174506	Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
3	nsv541504	chr12:57958701-58062311	Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58015600-58021400	Weak transcription	Gastric	stomach
2	chr12:58016000-58019600	Weak transcription	A549	lung
3	chr12:58016000-58020000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr12:58016000-58021200	Weak transcription	Pancreas	Pancrea
5	chr12:58016200-58020000	Weak transcription	Spleen	Spleen
6	chr12:58016200-58021400	Weak transcription	Right Ventricle	heart
7	chr12:58017000-58025000	Weak transcription	K562	blood
8	chr12:58018000-58019200	Weak transcription	Fetal Brain Female	brain
9	chr12:58018000-58024600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:58018600-58023000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr12:58018800-58019200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
12	chr12:58018800-58021600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr12:58018800-58024000	Strong transcription	Brain Germinal Matrix	brain
14	chr12:58018800-58024200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr12:58019000-58019400	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr12:58019000-58020600	Strong transcription	Aorta	Aorta
17	chr12:58019000-58023400	Weak transcription	Brain Angular Gyrus	brain
18	chr12:58019000-58023400	Weak transcription	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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