Variant report

Variant	rs187144836
Chromosome Location	chr14:39624088-39624089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr14:39623993-39624292	HepG2	liver:	n/a	n/a
2	CEBPB	chr14:39624048-39624342	HepG2	liver:	n/a	chr14:39624187-39624198
3	POLR2A	chr14:39623938-39624469	HL-60	blood:	n/a	n/a
4	CEBPB	chr14:39624045-39624347	HepG2	liver:	n/a	chr14:39624187-39624198
5	POLR2A	chr14:39624042-39624344	HL-60	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39624043..39626785-chr14:39637503..39639794,2	K562	blood:
2	chr14:39622454..39625117-chr14:39628651..39631009,2	K562	blood:

Variant related genes	Relation type
RPL7AP2	TF binding region
ENSG00000182400	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1051247	chr14:39604035-39652789	Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv977459	chr14:39623512-39627427	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39583800-39626000	Weak transcription	Spleen	Spleen
2	chr14:39584200-39636000	Weak transcription	Small Intestine	intestine
3	chr14:39584200-39638600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:39584400-39626600	Weak transcription	Aorta	Aorta
5	chr14:39584600-39625800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:39588600-39635400	Weak transcription	Fetal Brain Male	brain
7	chr14:39589200-39626400	Weak transcription	Fetal Heart	heart
8	chr14:39592800-39626600	Weak transcription	NHLF	lung
9	chr14:39598800-39636200	Weak transcription	Stomach Mucosa	stomach
10	chr14:39604400-39635400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr14:39605800-39625200	Weak transcription	HSMMtube	muscle
12	chr14:39607000-39625400	Weak transcription	Fetal Kidney	kidney
13	chr14:39608200-39630600	Weak transcription	NHEK	skin
14	chr14:39611000-39637600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr14:39611200-39638800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:39611400-39638000	Weak transcription	A549	lung
17	chr14:39612000-39631600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr14:39612400-39625400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr14:39612800-39637800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr14:39614200-39628200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr14:39614400-39636800	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr14:39614800-39636800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr14:39615200-39626400	Weak transcription	Pancreas	Pancrea
24	chr14:39615200-39627600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr14:39615800-39627000	Strong transcription	Duodenum Mucosa	Duodenum
26	chr14:39616200-39627200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr14:39616200-39627600	Strong transcription	HepG2	liver
28	chr14:39616200-39632200	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr14:39616200-39632200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr14:39616200-39632600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr14:39616200-39637000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:39616400-39627000	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr14:39616600-39624200	Strong transcription	Fetal Lung	lung
34	chr14:39616800-39629600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr14:39616800-39629600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr14:39616800-39632200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr14:39616800-39636400	Strong transcription	Fetal Muscle Trunk	muscle
38	chr14:39617000-39624400	Strong transcription	HUVEC	blood vessel
39	chr14:39617000-39628000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr14:39617000-39632400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr14:39617000-39634800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr14:39617000-39636200	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr14:39617200-39624200	Strong transcription	Placenta	Placenta
44	chr14:39617200-39624200	Strong transcription	Dnd41	blood
45	chr14:39617200-39624400	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr14:39617200-39627000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr14:39617200-39627000	Strong transcription	Fetal Brain Female	brain
48	chr14:39617200-39627200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr14:39617200-39627600	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr14:39617200-39628000	Strong transcription	Adipose Nuclei	Adipose

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