Variant report

Variant	rs187229438
Chromosome Location	chr7:40052790-40052791
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:40038038..40041383-chr7:40051581..40055589,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887973	chr7:39772654-40110720	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv887975	chr7:39858378-40124137	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
3	nsv1015322	chr7:40006195-40141195	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv2761319	chr7:40006195-40142139	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv464436	chr7:40018693-40133044	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv606706	chr7:40018693-40133044	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv606707	chr7:40021044-40133044	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv606708	chr7:40021044-40157040	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv887978	chr7:40030488-40124137	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv3477195	chr7:40051548-40063888	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv3477196	chr7:40051548-40063888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	esv13285	chr7:40051874-40063660	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40020400-40077600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:40025600-40055400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:40025800-40054800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr7:40025800-40055400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:40025800-40055400	Weak transcription	Fetal Heart	heart
6	chr7:40025800-40055400	Weak transcription	Stomach Mucosa	stomach
7	chr7:40025800-40059600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:40025800-40062800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:40025800-40082200	Weak transcription	Spleen	Spleen
10	chr7:40026000-40071200	Weak transcription	Brain Germinal Matrix	brain
11	chr7:40026600-40096800	Weak transcription	Right Ventricle	heart
12	chr7:40027800-40053800	Weak transcription	HepG2	liver
13	chr7:40027800-40054800	Weak transcription	Aorta	Aorta
14	chr7:40027800-40055400	Weak transcription	Fetal Brain Female	brain
15	chr7:40028000-40077800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr7:40028000-40127800	Weak transcription	Colonic Mucosa	Colon
17	chr7:40028200-40073000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr7:40034400-40072200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr7:40036600-40053000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:40042600-40055400	Weak transcription	Psoas Muscle	Psoas
21	chr7:40042800-40070400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr7:40043000-40061600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr7:40043400-40054800	Weak transcription	Gastric	stomach
24	chr7:40043600-40054000	Weak transcription	Pancreas	Pancrea
25	chr7:40043600-40057800	Weak transcription	HUVEC	blood vessel
26	chr7:40043600-40058000	Weak transcription	Fetal Brain Male	brain
27	chr7:40043600-40059800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr7:40043600-40067000	Weak transcription	K562	blood
29	chr7:40043600-40071600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr7:40043600-40076000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr7:40043600-40079800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr7:40043600-40095200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr7:40043600-40127800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr7:40043800-40055400	Weak transcription	Colon Smooth Muscle	Colon
35	chr7:40043800-40055400	Weak transcription	Fetal Lung	lung
36	chr7:40044400-40096000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr7:40045000-40052800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr7:40045200-40052800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr7:40045800-40054800	Weak transcription	GM12878-XiMat	blood
40	chr7:40047400-40054000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr7:40047600-40102600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr7:40048000-40054800	Weak transcription	Brain Anterior Caudate	brain
43	chr7:40048000-40102400	Weak transcription	HMEC	breast
44	chr7:40048000-40102400	Weak transcription	NHEK	skin
45	chr7:40048200-40055400	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr7:40048200-40058400	Weak transcription	Hela-S3	cervix
47	chr7:40048200-40059200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr7:40048400-40054800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr7:40048400-40055400	Weak transcription	HSMMtube	muscle
50	chr7:40048400-40066600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links