Variant report

Variant	rs187252460
Chromosome Location	chr15:42220018-42220019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42219188..42222413-chr15:42224091..42227939,3	MCF-7	breast:
2	chr15:42217839..42220523-chr15:42226005..42227853,2	K562	blood:
3	chr15:42215835..42217701-chr15:42219642..42223208,3	K562	blood:
4	chr15:42217980..42220140-chr15:42223299..42225570,2	K562	blood:
5	chr15:42219870..42220734-chr15:42264195..42264893,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103966	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv427958	chr15:42051317-42301283	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv904116	chr15:42076387-42229852	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
4	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
5	nsv1038933	chr15:42138456-42309087	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
6	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
7	nsv1054728	chr15:42177772-42310009	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv519577	chr15:42219960-42220076	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42201200-42225400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:42202200-42225200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr15:42210600-42225400	Weak transcription	K562	blood
4	chr15:42210800-42221400	Weak transcription	Brain Angular Gyrus	brain
5	chr15:42210800-42230400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:42211600-42221000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr15:42211600-42226200	Weak transcription	Thymus	Thymus
8	chr15:42211800-42220800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:42211800-42220800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:42211800-42221000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:42212000-42220800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:42212000-42221000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr15:42212000-42224200	Weak transcription	Esophagus	oesophagus
14	chr15:42212000-42224400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:42212000-42225400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr15:42212800-42220200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr15:42213200-42221000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr15:42214000-42220200	Weak transcription	Fetal Stomach	stomach
19	chr15:42214000-42220800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr15:42214200-42220400	Weak transcription	Brain Anterior Caudate	brain
21	chr15:42214200-42220800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:42214200-42221000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr15:42214200-42221000	Weak transcription	Brain Hippocampus Middle	brain
24	chr15:42214800-42220800	Weak transcription	Ovary	ovary
25	chr15:42215000-42223800	Enhancers	Primary B cells from peripheral blood	blood
26	chr15:42215400-42221600	Enhancers	Primary B cells from cord blood	blood
27	chr15:42216000-42220200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr15:42217400-42223200	Enhancers	Stomach Mucosa	stomach
29	chr15:42217400-42223800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr15:42217600-42220800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr15:42217600-42224000	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr15:42217800-42225400	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr15:42217800-42225400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr15:42218000-42220600	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr15:42218200-42221000	Enhancers	Adipose Nuclei	Adipose
36	chr15:42218200-42223600	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr15:42218400-42221800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:42218400-42223000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr15:42218400-42223600	Enhancers	Liver	Liver
40	chr15:42218400-42223800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:42218400-42223800	Enhancers	Duodenum Mucosa	Duodenum
42	chr15:42218600-42220800	Enhancers	Fetal Intestine Small	intestine
43	chr15:42218600-42223400	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr15:42218800-42220200	Enhancers	Hela-S3	cervix
45	chr15:42218800-42220200	Weak transcription	Osteobl	bone
46	chr15:42218800-42221000	Enhancers	HUVEC	blood vessel
47	chr15:42218800-42223200	Enhancers	Colonic Mucosa	Colon
48	chr15:42219000-42223200	Enhancers	Rectal Mucosa Donor 29	rectum
49	chr15:42219000-42225200	Weak transcription	Fetal Thymus	thymus
50	chr15:42219200-42220400	Weak transcription	Small Intestine	intestine

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