Variant report

Variant	rs187261687
Chromosome Location	chr10:89653058-89653059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89646944..89651726-chr10:89652897..89657139,4	MCF-7	breast:
2	chr10:89642392..89644637-chr10:89652677..89655610,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1050406	chr10:89632138-89657906	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1833763	chr10:89649838-89653686	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3530691	chr10:89652219-89654006	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv820703	chr10:89652731-89653791	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3530658	chr10:89652736-89653813	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3530669	chr10:89652755-89653784	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3530680	chr10:89652808-89653730	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3530703	chr10:89652824-89653725	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv13725	chr10:89652835-89653712	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv551833	chr10:89652878-89653588	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv551834	chr10:89652878-89653686	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv1834539	chr10:89652878-89657150	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv1836451	chr10:89652878-89657150	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv1839072	chr10:89652878-89657150	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv551835	chr10:89653034-89653686	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89625600-89663000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:89628400-89662000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:89631000-89663400	Weak transcription	Brain Angular Gyrus	brain
4	chr10:89633000-89663400	Weak transcription	Pancreas	Pancrea
5	chr10:89633400-89675800	Weak transcription	Small Intestine	intestine
6	chr10:89633800-89655600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:89636000-89655400	Weak transcription	Brain Substantia Nigra	brain
8	chr10:89636200-89661800	Weak transcription	Brain Anterior Caudate	brain
9	chr10:89639000-89655400	Weak transcription	Fetal Heart	heart
10	chr10:89639000-89655400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:89639000-89656200	Weak transcription	Stomach Mucosa	stomach
12	chr10:89641600-89663000	Weak transcription	Esophagus	oesophagus
13	chr10:89642600-89657000	Strong transcription	Dnd41	blood
14	chr10:89644600-89654000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr10:89646600-89663800	Weak transcription	Fetal Kidney	kidney
16	chr10:89646800-89655800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr10:89646800-89657400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:89646800-89659400	Strong transcription	Fetal Thymus	thymus
19	chr10:89646800-89663000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr10:89647000-89655400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr10:89647000-89667400	Weak transcription	HMEC	breast
22	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr10:89647200-89657400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr10:89647200-89662000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr10:89647200-89675400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr10:89647600-89655400	Weak transcription	Fetal Brain Female	brain
27	chr10:89647600-89656600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr10:89647600-89657000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr10:89647600-89671800	Weak transcription	HUVEC	blood vessel
30	chr10:89647800-89655600	Weak transcription	Liver	Liver
31	chr10:89647800-89657000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:89647800-89662000	Weak transcription	Duodenum Mucosa	Duodenum
33	chr10:89647800-89665600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr10:89647800-89671000	Weak transcription	A549	lung
35	chr10:89648000-89654600	Weak transcription	Psoas Muscle	Psoas
36	chr10:89648000-89656800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr10:89648000-89656800	Weak transcription	Fetal Intestine Small	intestine
38	chr10:89648000-89656800	Weak transcription	Left Ventricle	heart
39	chr10:89648000-89657800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr10:89648000-89657800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr10:89648000-89663000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr10:89648000-89663000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr10:89648000-89663000	Weak transcription	Lung	lung
44	chr10:89648000-89663200	Weak transcription	Gastric	stomach
45	chr10:89648000-89663200	Weak transcription	Spleen	Spleen
46	chr10:89648000-89664200	Weak transcription	NH-A	brain
47	chr10:89648000-89683000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr10:89648200-89657200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr10:89648200-89662800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr10:89648200-89663000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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