Variant report

Variant	rs187272821
Chromosome Location	chr17:20704849-20704850
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916440	chr17:20171468-20839266	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv2751619	chr17:20462908-20914156	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv3361931	chr17:20539962-20845258	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv469647	chr17:20552253-20751738	Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv482489	chr17:20552253-20751738	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv3330516	chr17:20572433-20862663	Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv907884	chr17:20613642-20715726	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv9512	chr17:20703055-20709128	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv1811047	chr17:20703343-20708705	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv32971	chr17:20703572-20705693	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:20687800-20705000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:20702000-20705000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr17:20704600-20705000	Enhancers	Hela-S3	cervix
4	chr17:20704600-20705600	Active TSS	A549	lung
5	chr17:20704800-20705000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr17:20704800-20705000	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr17:20704800-20705200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr17:20704800-20705400	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr17:20704800-20705400	Active TSS	H1 Cell Line	embryonic stem cell
10	chr17:20704800-20705400	Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr17:20704800-20705600	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr17:20704800-20705600	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr17:20704800-20705600	Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr17:20704800-20705600	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr17:20704800-20705600	Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr17:20704800-20705600	Active TSS	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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