Variant report

Variant	rs187298629
Chromosome Location	chr11:59016308-59016309
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	esv1821250	chr11:58925860-59059179	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv3351601	chr11:58979308-59052763	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3381199	chr11:59015574-59068938	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59012200-59019200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:59013200-59017000	Enhancers	Primary B cells from cord blood	blood
3	chr11:59013200-59017400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr11:59013400-59016600	Enhancers	Hela-S3	cervix
5	chr11:59014200-59016400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:59014200-59016600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:59014400-59016400	Enhancers	Primary T cells from cord blood	blood
8	chr11:59014400-59016400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr11:59014400-59016600	Enhancers	Primary T cells fromperipheralblood	blood
10	chr11:59014800-59016400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr11:59015000-59016400	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr11:59015200-59016600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr11:59015200-59016600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:59015600-59016400	Enhancers	Primary hematopoietic stem cells	blood
15	chr11:59015600-59016400	Weak transcription	Right Atrium	heart
16	chr11:59015600-59025000	Weak transcription	Lung	lung
17	chr11:59016000-59016400	Weak transcription	Placenta	Placenta
18	chr11:59016000-59016400	Enhancers	Spleen	Spleen
19	chr11:59016200-59016400	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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