Variant report
| Variant | rs1873596 |
|---|---|
| Chromosome Location | chr3:68380432-68380433 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs13340202 | 1.00[JPT][hapmap] |
| rs1388507 | 1.00[YRI][hapmap] |
| rs17047523 | 1.00[JPT][hapmap] |
| rs17047525 | 1.00[JPT][hapmap] |
| rs17396472 | 1.00[JPT][hapmap] |
| rs1873597 | 1.00[JPT][hapmap] |
| rs7618788 | 1.00[JPT][hapmap] |
| rs7629385 | 1.00[JPT][hapmap] |
| rs7640148 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2752014 | chr3:68091879-68416989 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1010992 | chr3:68353191-68388825 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv834721 | chr3:68365963-68526394 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
