Variant report

Variant	rs1873618
Chromosome Location	chr3:46175976-46175977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1392288	0.86[CEU][hapmap]
rs1463680	0.82[CEU][hapmap]
rs1873617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2373155	0.87[CEU][hapmap];0.89[AFR][1000 genomes]
rs4683182	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7634822	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9875616	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1873618	CCR3	cis	Whole Blood	GTEx

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46168800-46178200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:46170000-46177200	Enhancers	Fetal Thymus	thymus
3	chr3:46173000-46176800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:46173800-46176400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:46173800-46184400	Weak transcription	Spleen	Spleen
6	chr3:46174000-46202800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:46174200-46183400	Weak transcription	Primary B cells from cord blood	blood
8	chr3:46174400-46183200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:46175000-46177400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:46175200-46176200	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr3:46175200-46176600	Weak transcription	GM12878-XiMat	blood
12	chr3:46175400-46177000	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr3:46175600-46176000	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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