Variant report

Variant	rs187385654
Chromosome Location	chr11:108725170-108725171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:108724551..108728039-chr11:108729309..108732263,3	K562	blood:
2	chr11:108717216..108720020-chr11:108723886..108726081,2	K562	blood:
3	chr11:108722445..108725318-chr11:108725821..108728693,2	MCF-7	breast:
4	chr11:108723598..108725944-chr11:108749030..108751490,2	K562	blood:
5	chr11:108722635..108725308-chr11:108736229..108737984,2	K562	blood:

Variant related genes	Relation type
ENSG00000178105	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108707600-108740800	Weak transcription	HMEC	breast
2	chr11:108708200-108729200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr11:108710200-108729200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:108710200-108729400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:108710200-108735800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:108710200-108738200	Weak transcription	Gastric	stomach
7	chr11:108710600-108729800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:108715400-108738200	Weak transcription	K562	blood
9	chr11:108715600-108725200	Weak transcription	Liver	Liver
10	chr11:108717600-108729600	Weak transcription	Dnd41	blood
11	chr11:108717800-108729400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:108721400-108728200	Weak transcription	Lung	lung
13	chr11:108721600-108742200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:108723200-108725200	Enhancers	Psoas Muscle	Psoas
15	chr11:108723600-108733200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:108723800-108725400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:108724000-108725400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:108724200-108725400	Flanking Active TSS	Fetal Heart	heart
19	chr11:108724200-108725400	Enhancers	NH-A	brain
20	chr11:108724400-108725200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:108724400-108725200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr11:108724400-108725200	Flanking Active TSS	Colon Smooth Muscle	Colon
23	chr11:108724400-108725200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr11:108724400-108725200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr11:108724400-108725200	Enhancers	Small Intestine	intestine
26	chr11:108724400-108725200	Flanking Active TSS	GM12878-XiMat	blood
27	chr11:108724400-108725200	Enhancers	NHLF	lung
28	chr11:108724400-108725400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:108724400-108725400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:108724400-108725400	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr11:108724400-108725400	Enhancers	Ovary	ovary
32	chr11:108724400-108725400	Enhancers	NHEK	skin
33	chr11:108724400-108725800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr11:108724400-108725800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:108724600-108725200	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
36	chr11:108724600-108725200	Enhancers	Primary hematopoietic stem cells	blood
37	chr11:108724600-108725200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
38	chr11:108724600-108725200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr11:108724600-108725200	Flanking Active TSS	Osteobl	bone
40	chr11:108724600-108725400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:108724600-108725400	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr11:108724600-108725400	Enhancers	Fetal Intestine Small	intestine
43	chr11:108724600-108725400	Flanking Active TSS	Rectal Smooth Muscle	rectum
44	chr11:108724600-108725400	Enhancers	Stomach Mucosa	stomach
45	chr11:108724600-108725400	Enhancers	HSMM	muscle
46	chr11:108724600-108725600	Enhancers	Fetal Thymus	thymus
47	chr11:108724600-108726000	Weak transcription	Fetal Kidney	kidney
48	chr11:108724600-108729600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr11:108724800-108725200	Flanking Active TSS	Primary B cells from peripheral blood	blood
50	chr11:108724800-108725200	Flanking Active TSS	Stomach Smooth Muscle	stomach

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