Variant report

Variant	rs187427911
Chromosome Location	chr2:36687809-36687810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36582359..36584332-chr2:36684564..36688180,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150938	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv581468	chr2:36687111-36715689	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36660800-36695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:36668800-36690200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr2:36669200-36688200	Weak transcription	Thymus	Thymus
4	chr2:36669400-36688000	Weak transcription	Fetal Thymus	thymus
5	chr2:36670000-36688200	Weak transcription	Primary T cells from cord blood	blood
6	chr2:36672800-36688000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:36673600-36688000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:36675400-36688000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr2:36678000-36688000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr2:36678400-36688000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr2:36679200-36688400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr2:36679800-36704000	Weak transcription	Fetal Brain Female	brain
13	chr2:36680400-36695600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr2:36682400-36688800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:36683400-36688200	Weak transcription	Primary B cells from cord blood	blood
16	chr2:36683400-36691400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr2:36683800-36688000	Genic enhancers	HUVEC	blood vessel
18	chr2:36683800-36690800	Genic enhancers	Osteobl	bone
19	chr2:36683800-36704000	Weak transcription	Pancreas	Pancrea
20	chr2:36684000-36688200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr2:36684000-36695800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr2:36684200-36688000	Weak transcription	Psoas Muscle	Psoas
23	chr2:36684200-36688400	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr2:36684200-36695800	Weak transcription	Brain Substantia Nigra	brain
25	chr2:36684400-36691800	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr2:36684600-36688000	Genic enhancers	NHLF	lung
27	chr2:36684800-36688000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr2:36684800-36691800	Weak transcription	Fetal Muscle Leg	muscle
29	chr2:36684800-36694000	Weak transcription	Fetal Brain Male	brain
30	chr2:36684800-36695800	Weak transcription	Fetal Muscle Trunk	muscle
31	chr2:36685000-36691600	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr2:36685200-36689400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr2:36685600-36690400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr2:36685800-36689800	Genic enhancers	Hela-S3	cervix
35	chr2:36686000-36688000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr2:36686000-36688200	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr2:36686000-36689200	Genic enhancers	HepG2	liver
38	chr2:36686200-36688000	Genic enhancers	NHEK	skin
39	chr2:36686200-36689000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr2:36686400-36689200	Enhancers	Adipose Nuclei	Adipose
41	chr2:36686400-36689400	Enhancers	NHDF-Ad	bronchial
42	chr2:36686400-36689800	Genic enhancers	HSMM	muscle
43	chr2:36686600-36688000	Enhancers	NH-A	brain
44	chr2:36686600-36688200	Genic enhancers	Muscle Satellite Cultured Cells	--
45	chr2:36686600-36689400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr2:36686600-36689600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr2:36686600-36689600	Enhancers	HMEC	breast
48	chr2:36686600-36690200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr2:36686600-36690400	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr2:36686600-36691200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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