Variant report

Variant	rs187436234
Chromosome Location	chr8:59494635-59494636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59470291..59472157-chr8:59493284..59495142,2	K562	blood:
2	chr8:59465818..59467351-chr8:59492193..59494904,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137575	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv890939	chr8:59471187-59544413	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1031537	chr8:59482949-59536971	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv397168	chr8:59488993-59497876	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv981944	chr8:59494327-59495538	Strong transcription Weak transcription	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59467400-59559400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:59472800-59515800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:59473000-59497400	Weak transcription	Stomach Mucosa	stomach
4	chr8:59473000-59506400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:59473200-59508600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr8:59473400-59495400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr8:59474000-59497000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:59476600-59505600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:59476800-59495400	Weak transcription	Pancreas	Pancrea
10	chr8:59476800-59500600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:59477000-59508200	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr8:59477200-59503000	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr8:59477200-59503400	Strong transcription	NHDF-Ad	bronchial
14	chr8:59477200-59506200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr8:59477600-59496800	Strong transcription	Placenta	Placenta
16	chr8:59477600-59500600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:59477600-59503600	Strong transcription	Osteobl	bone
18	chr8:59477600-59514200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:59477800-59508800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr8:59478000-59497000	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr8:59478000-59500400	Strong transcription	NH-A	brain
22	chr8:59478000-59500800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr8:59478000-59502800	Strong transcription	Fetal Thymus	thymus
24	chr8:59478000-59503000	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr8:59478000-59503200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr8:59478000-59506400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:59478000-59508200	Strong transcription	Primary B cells from peripheral blood	blood
28	chr8:59478000-59508600	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr8:59478000-59508800	Strong transcription	Fetal Intestine Large	intestine
30	chr8:59479000-59503800	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr8:59479200-59499400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr8:59479200-59505600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr8:59479600-59500600	Strong transcription	HUVEC	blood vessel
34	chr8:59479600-59508000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr8:59480400-59503000	Strong transcription	Adipose Nuclei	Adipose
36	chr8:59480600-59515800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr8:59481200-59498000	Weak transcription	Brain Substantia Nigra	brain
38	chr8:59481400-59502000	Weak transcription	Fetal Brain Male	brain
39	chr8:59483000-59504400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr8:59483200-59508800	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr8:59483400-59501000	Strong transcription	Primary B cells from cord blood	blood
42	chr8:59483800-59500600	Strong transcription	Liver	Liver
43	chr8:59483800-59500600	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr8:59483800-59504400	Strong transcription	Duodenum Mucosa	Duodenum
45	chr8:59483800-59528000	Strong transcription	Dnd41	blood
46	chr8:59484000-59496800	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr8:59484000-59505600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr8:59484400-59503200	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr8:59484400-59503800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr8:59484800-59494800	Strong transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links