Variant report

Variant	rs187439841
Chromosome Location	chr1:213120107-213120108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr1:213120020-213120170	NHLF	lung:	n/a	n/a
2	GATA3	chr1:213119661-213120189	MCF-7	breast:	n/a	n/a
3	GATA3	chr1:213119178-213120132	T-47D	breast:	n/a	n/a
4	NFIC	chr1:213120100-213120573	GM12878	blood:	n/a	n/a
5	NR2F2	chr1:213119630-213120132	MCF-7	breast:	n/a	n/a
6	SPI1	chr1:213119939-213120600	GM12878	blood:	n/a	chr1:213120297-213120306
7	IKZF1	chr1:213119994-213120565	GM12878	blood:	n/a	n/a
8	GATA3	chr1:213119660-213120126	T-47D	breast:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:213098539..213100855-chr1:213119235..213121922,2	K562	blood:
2	chr1:213118180..213120592-chr1:213121155..213123228,2	K562	blood:
3	chr1:213114346..213116159-chr1:213119479..213121758,2	K562	blood:
4	chr1:213116193..213121548-chr1:213122563..213128196,5	K562	blood:

No data

No data

No data

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008594	chr1:213110654-213236750	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv524488	chr1:213120103-213120118	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213116000-213121200	Enhancers	GM12878-XiMat	blood
2	chr1:213116400-213123400	Weak transcription	Right Atrium	heart
3	chr1:213118800-213120800	Enhancers	Primary B cells from cord blood	blood
4	chr1:213119400-213120200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr1:213119400-213120200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:213119600-213120200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr1:213119600-213120400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:213119600-213120400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr1:213119600-213121200	Enhancers	Primary B cells from peripheral blood	blood
10	chr1:213119800-213120200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:213119800-213120200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr1:213120000-213120400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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