Variant report

Variant	rs1874611
Chromosome Location	chr15:49727271-49727272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49656837..49659363-chr15:49725678..49728364,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259531	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs59512031	1.00[AMR][1000 genomes]
rs7177255	1.00[AMR][1000 genomes]
rs74014917	1.00[AMR][1000 genomes]
rs74014921	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49716200-49732200	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr15:49716400-49737200	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:49718000-49727800	Weak transcription	HSMMtube	muscle
4	chr15:49718000-49731200	Weak transcription	Left Ventricle	heart
5	chr15:49719400-49731200	Weak transcription	Fetal Muscle Leg	muscle
6	chr15:49721000-49736200	Weak transcription	Right Ventricle	heart
7	chr15:49721800-49730000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr15:49722800-49728200	Weak transcription	Fetal Stomach	stomach
9	chr15:49723800-49727400	Weak transcription	NHLF	lung
10	chr15:49724200-49727400	Enhancers	Osteobl	bone
11	chr15:49725400-49731000	Weak transcription	Brain Substantia Nigra	brain
12	chr15:49725400-49733800	Enhancers	Rectal Smooth Muscle	rectum
13	chr15:49726200-49732800	Enhancers	Fetal Heart	heart
14	chr15:49726400-49728400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:49726400-49729400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr15:49726600-49729200	Enhancers	HSMM	muscle
17	chr15:49726800-49728600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr15:49726800-49728800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:49726800-49731200	Weak transcription	Ovary	ovary
20	chr15:49727000-49730400	Enhancers	Colon Smooth Muscle	Colon
21	chr15:49727200-49727400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:49727200-49727800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:49727200-49728000	Enhancers	NHDF-Ad	bronchial
24	chr15:49727200-49729200	Enhancers	Fetal Lung	lung

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