Variant report

Variant	rs1874613
Chromosome Location	chr15:49787404-49787405
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3985841	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9263	chr15:49734435-49809465	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1043119	chr15:49760222-49844366	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1039185	chr15:49786255-49844366	Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49764600-49788400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr15:49777200-49788800	Weak transcription	Fetal Lung	lung
3	chr15:49781800-49789800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:49782200-49788000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:49783600-49789800	Enhancers	Hela-S3	cervix
6	chr15:49784400-49789200	Enhancers	NHDF-Ad	bronchial
7	chr15:49785800-49788400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr15:49786400-49788800	Enhancers	NHLF	lung
9	chr15:49786600-49787600	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr15:49786600-49787800	Enhancers	Rectal Smooth Muscle	rectum
11	chr15:49786600-49788000	Enhancers	Colon Smooth Muscle	Colon
12	chr15:49786600-49789200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:49786800-49789000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:49787000-49787600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:49787000-49789600	Enhancers	Osteobl	bone
16	chr15:49787200-49788000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:49787200-49788400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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