Variant report

Variant	rs187473209
Chromosome Location	chr11:72310914-72310915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:25)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:25 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:72310910-72311035	MCF-7	breast:	n/a	n/a
2	CTCF	chr11:72310860-72311010	MCF-7	breast:	n/a	n/a
3	CTCF	chr11:72310907-72311019	MCF-7	breast:	n/a	n/a
4	CTCF	chr11:72310840-72310990	GM12871	blood:	n/a	n/a
5	CTCF	chr11:72310900-72311050	Hela-S3	cervix:	n/a	n/a
6	CTCF	chr11:72310900-72311050	AG09309	skin:	n/a	n/a
7	CTCF	chr11:72310880-72311030	HCT-116	colon:	n/a	n/a
8	CTCF	chr11:72310900-72311050	Caco-2	colon:	n/a	n/a
9	CTCF	chr11:72310880-72311030	K562	blood:	n/a	n/a
10	CTCF	chr11:72309585-72311360	A549	lung:	n/a	chr11:72310140-72310156 chr11:72310139-72310157 chr11:72309760-72309767 chr11:72310141-72310162 chr11:72310142-72310155
11	CTCF	chr11:72310910-72311042	NHEK	skin:	n/a	n/a
12	CTCF	chr11:72310860-72311010	GM12868	blood:	n/a	n/a
13	CTCF	chr11:72310877-72311056	MCF-7	breast:	n/a	n/a
14	CTCF	chr11:72310900-72311050	WERI-Rb-1	eye:	n/a	n/a
15	CTCF	chr11:72310910-72311061	H1-hESC	embryonic stem cell:	n/a	n/a
16	SMARCC1	chr11:72310023-72311124	Hela-S3	cervix:	n/a	chr11:72310556-72310565
17	CTCF	chr11:72310900-72311050	BE2_C	brain:	n/a	n/a
18	CTCF	chr11:72310883-72311070	Hela-S3	cervix:	n/a	n/a
19	CTCF	chr11:72310860-72311010	GM06990	blood:	n/a	n/a
20	CTCF	chr11:72310909-72311035	GM12891	blood:	n/a	n/a
21	CTCF	chr11:72310850-72311083	HepG2	liver:	n/a	n/a
22	CTCF	chr11:72310900-72311050	HBMEC	blood vessel:	n/a	n/a
23	CTCF	chr11:72310906-72311089	K562	blood:	n/a	n/a
24	CTCF	chr11:72310898-72311076	GM12892	blood:	n/a	n/a
25	CTCF	chr11:72310900-72311050	A549	lung:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:72309197..72311837-chr11:72341889..72344712,2	K562	blood:
2	chr11:72310603..72311371-chr11:72394905..72395850,2	MCF-7	breast:
3	chr11:72309579..72311274-chr11:72353556..72354810,14	MCF-7	breast:
4	chr11:72310303..72312102-chr11:72363033..72365890,2	MCF-7	breast:
5	chr11:72310686..72313140-chr11:72320651..72322680,2	K562	blood:
6	chr11:72310660..72312266-chr11:72342413..72344790,2	MCF-7	breast:

No data

Variant related genes	Relation type
PDE2A	TF binding region
ENSG00000255808	Chromatin interaction
ENSG00000186642	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
2	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
3	esv1832864	chr11:72270965-72389125	Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
4	nsv832207	chr11:72272750-72469122	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
5	nsv468633	chr11:72281884-72336564	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
6	nsv468634	chr11:72281884-72336564	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
7	nsv555406	chr11:72281884-72336564	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
8	nsv523601	chr11:72281884-72430935	Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
9	nsv468635	chr11:72284569-72336564	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
10	nsv555407	chr11:72284569-72336564	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1042182	chr11:72294042-72348491	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
12	esv3401549	chr11:72310710-72313204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72303600-72313600	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:72304600-72316600	Weak transcription	Left Ventricle	heart
3	chr11:72306400-72315200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr11:72306800-72311000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:72308400-72312200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:72310000-72311200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr11:72310200-72311000	Enhancers	Hela-S3	cervix
8	chr11:72310200-72311000	Enhancers	HSMM	muscle
9	chr11:72310200-72311000	Enhancers	HSMMtube	muscle
10	chr11:72310200-72311200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:72310200-72311600	Enhancers	Brain Anterior Caudate	brain
12	chr11:72310200-72312000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
13	chr11:72310200-72312200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:72310400-72311000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
15	chr11:72310400-72311600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr11:72310400-72312000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
17	chr11:72310400-72312000	Enhancers	A549	lung
18	chr11:72310400-72312400	Weak transcription	Colon Smooth Muscle	Colon
19	chr11:72310400-72312800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:72310400-72316800	Weak transcription	Colonic Mucosa	Colon
21	chr11:72310600-72311400	Strong transcription	Fetal Brain Female	brain
22	chr11:72310600-72312000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:72310600-72312000	Genic enhancers	Spleen	Spleen
24	chr11:72310600-72316000	Weak transcription	Right Ventricle	heart
25	chr11:72310800-72311000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
26	chr11:72310800-72311000	Enhancers	Esophagus	oesophagus
27	chr11:72310800-72311000	Bivalent Enhancer	NH-A	brain
28	chr11:72310800-72311200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:72310800-72311200	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links