Variant report

Variant	rs187501960
Chromosome Location	chr1:173606847-173606848
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415007	chr1:173606736-173611929	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173598000-173607000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:173606800-173607600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
3	chr1:173606800-173607800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
4	chr1:173606800-173608000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:173606800-173609600	Active TSS	H1 Cell Line	embryonic stem cell
6	chr1:173606800-173611400	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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