Variant report

Variant	rs187529476
Chromosome Location	chr6:118631457-118631458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:118628896..118631734-chr6:118872419..118875351,2	K562	blood:
2	chr6:118631014..118632814-chr6:118644282..118647263,2	MCF-7	breast:
3	chr6:118630135..118632500-chr6:118803686..118805267,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv604554	chr6:118631282-118716318	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118625000-118631600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:118627800-118631600	Enhancers	Stomach Smooth Muscle	stomach
3	chr6:118627800-118638000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:118627800-118641000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:118629000-118640800	Weak transcription	Fetal Brain Female	brain
6	chr6:118629200-118635200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:118629200-118640600	Weak transcription	Ovary	ovary
8	chr6:118629200-118641000	Weak transcription	Brain Angular Gyrus	brain
9	chr6:118629400-118640600	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:118629800-118631600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:118629800-118632000	Enhancers	Fetal Heart	heart
12	chr6:118630600-118631600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:118630600-118640800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr6:118631000-118631600	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr6:118631400-118631600	Weak transcription	Fetal Stomach	stomach
16	chr6:118631400-118632200	Weak transcription	Aorta	Aorta
17	chr6:118631400-118634000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:118631400-118634400	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:118631400-118635000	Weak transcription	Left Ventricle	heart
20	chr6:118631400-118638800	Weak transcription	Brain Germinal Matrix	brain
21	chr6:118631400-118640600	Weak transcription	Psoas Muscle	Psoas

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