Variant report

Variant	rs187547146
Chromosome Location	chr17:45092727-45092728
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:45092703-45093011	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:45085709..45088129-chr17:45091783..45094489,2	K562	blood:

Variant related genes	Relation type
LRRC37A17P	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3492820	chr17:44174959-45161556	Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3492821	chr17:44174959-45161556	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	esv3502492	chr17:44305975-45169159	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv3502493	chr17:44305975-45169159	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	nsv908562	chr17:44828931-45102413	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv833466	chr17:45020360-45204537	Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
8	nsv833467	chr17:45063935-45252624	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	nsv522797	chr17:45084279-45183152	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	esv1849526	chr17:45087601-45132750	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
11	nsv9565	chr17:45088304-45135259	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
12	nsv962331	chr17:45088443-45141744	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
13	esv1843358	chr17:45090768-45141959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
14	esv16081	chr17:45091145-45133206	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
15	esv1851648	chr17:45091619-45146146	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
16	esv3418827	chr17:45091803-45096001	Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45057200-45100000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr17:45062200-45113200	Weak transcription	Ovary	ovary
3	chr17:45075200-45130200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr17:45079200-45098200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr17:45079400-45095800	Weak transcription	Fetal Intestine Small	intestine
6	chr17:45083000-45095600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr17:45083200-45095600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr17:45083400-45107000	Weak transcription	Lung	lung
9	chr17:45085200-45095600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr17:45086000-45129600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr17:45086000-45129600	Weak transcription	Fetal Muscle Leg	muscle
12	chr17:45086800-45095800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr17:45086800-45129600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr17:45087200-45111400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr17:45087200-45126600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr17:45087400-45097200	Weak transcription	Brain Hippocampus Middle	brain
17	chr17:45087400-45098200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr17:45087600-45129600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr17:45087800-45097200	Weak transcription	HSMMtube	muscle
20	chr17:45088400-45095600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr17:45088400-45097400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr17:45088600-45095800	Weak transcription	Fetal Stomach	stomach
23	chr17:45088600-45128600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr17:45090000-45131600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr17:45090200-45131000	Weak transcription	Dnd41	blood
26	chr17:45090600-45100200	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr17:45090600-45103600	Weak transcription	Primary B cells from peripheral blood	blood
28	chr17:45090600-45129600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr17:45091200-45129600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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