Variant report

Variant	rs187555025
Chromosome Location	chr5:7849486-7849487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:7849253..7853514-chr5:7868734..7871211,5	MCF-7	breast:
2	chr5:7843515..7845259-chr5:7848179..7851160,2	MCF-7	breast:
3	chr5:7848000..7849611-chr5:7874287..7876692,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124279	Chromatin interaction
ENSG00000124275	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916892	chr5:7634377-8158890	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv949492	chr5:7682909-7953909	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv533983	chr5:7701457-8275379	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv461927	chr5:7757812-7854289	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv597004	chr5:7757812-7854289	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv3436798	chr5:7849477-7852325	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:7849000-7849600	Enhancers	Fetal Brain Male	brain
2	chr5:7849000-7850200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:7849000-7851000	Weak transcription	HSMM	muscle
4	chr5:7849200-7849600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
5	chr5:7849200-7849800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:7849200-7849800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:7849400-7849600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
8	chr5:7849400-7849600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
9	chr5:7849400-7849600	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:7849400-7849600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
11	chr5:7849400-7849600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
12	chr5:7849400-7849600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:7849400-7849600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:7849400-7849600	Enhancers	Brain Anterior Caudate	brain
15	chr5:7849400-7849600	Active TSS	Brain Cingulate Gyrus	brain
16	chr5:7849400-7849600	Enhancers	Brain Germinal Matrix	brain
17	chr5:7849400-7849600	Enhancers	Brain Hippocampus Middle	brain
18	chr5:7849400-7849600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr5:7849400-7849600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr5:7849400-7849600	Enhancers	Fetal Brain Female	brain
21	chr5:7849400-7849600	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
22	chr5:7849400-7849800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
23	chr5:7849400-7849800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
24	chr5:7849400-7849800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
25	chr5:7849400-7850000	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:7849400-7850000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
27	chr5:7849400-7850400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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