Variant report

Variant	rs187574
Chromosome Location	chr5:61045934-61045935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs153376	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2030891	0.99[ASN][1000 genomes]
rs2937621	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2937622	0.99[ASN][1000 genomes]
rs2937623	0.99[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs187574	DIO3	trans	parietal	SCAN
rs187574	LRRC70	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61034000-61073400	Weak transcription	Brain Substantia Nigra	brain
2	chr5:61034600-61046000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr5:61044000-61046400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr5:61044800-61046000	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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