Variant report

Variant	rs1875750
Chromosome Location	chr4:150706488-150706489
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1394844	0.88[EUR][1000 genomes]
rs1503748	0.85[ASN][1000 genomes]
rs1505475	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1505476	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17687523	0.88[EUR][1000 genomes]
rs1876069	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28637502	0.93[EUR][1000 genomes]
rs72961770	0.85[ASN][1000 genomes]
rs72961785	0.89[ASN][1000 genomes]
rs72961791	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7659854	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016169	chr4:150670127-150903827	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537299	chr4:150670127-150903827	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150702800-150707200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:150703000-150706800	Weak transcription	HSMM	muscle
3	chr4:150703000-150714400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:150704400-150707200	Weak transcription	Hela-S3	cervix
5	chr4:150705200-150707200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:150705600-150707000	Weak transcription	HMEC	breast
7	chr4:150706200-150707600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:150706400-150707200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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