Variant report

Variant	rs187579149
Chromosome Location	chr8:99017326-99017327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr8:99017320-99017470	NHDF-neo	bronchial:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99015593..99019656-chr8:99049212..99053715,4	MCF-7	breast:
2	chr8:99014119..99017352-chr8:99021059..99024142,3	MCF-7	breast:

Variant related genes	Relation type
MATN2	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv528695	chr8:98960813-99022009	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv15294	chr8:99017130-99025235	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:98992600-99019400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:99008400-99045000	Weak transcription	Colonic Mucosa	Colon
3	chr8:99009000-99030000	Weak transcription	Pancreas	Pancrea
4	chr8:99009000-99030200	Weak transcription	Esophagus	oesophagus
5	chr8:99009600-99022600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr8:99012000-99028800	Weak transcription	Aorta	Aorta
7	chr8:99012000-99032000	Weak transcription	Gastric	stomach
8	chr8:99012400-99028800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr8:99013800-99018600	Weak transcription	Fetal Intestine Small	intestine
10	chr8:99014000-99022400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr8:99014200-99025400	Genic enhancers	Fetal Muscle Leg	muscle
12	chr8:99014200-99029600	Weak transcription	Fetal Intestine Large	intestine
13	chr8:99014400-99018000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr8:99014600-99019600	Weak transcription	Liver	Liver
15	chr8:99014600-99019800	Weak transcription	Fetal Lung	lung
16	chr8:99014600-99020000	Weak transcription	HSMM	muscle
17	chr8:99014600-99021200	Enhancers	Brain Cingulate Gyrus	brain
18	chr8:99014600-99021400	Enhancers	Brain Hippocampus Middle	brain
19	chr8:99014800-99017400	Weak transcription	Ovary	ovary
20	chr8:99014800-99018000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:99014800-99018000	Weak transcription	Adipose Nuclei	Adipose
22	chr8:99014800-99018200	Weak transcription	NH-A	brain
23	chr8:99014800-99022600	Strong transcription	Placenta Amnion	Placenta Amnion
24	chr8:99014800-99023000	Weak transcription	Colon Smooth Muscle	Colon
25	chr8:99015000-99017800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr8:99015000-99018200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr8:99015000-99019800	Weak transcription	NHDF-Ad	bronchial
28	chr8:99015000-99020000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr8:99015000-99034400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr8:99015200-99022000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr8:99015200-99023600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr8:99015400-99018800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr8:99015400-99021200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr8:99015800-99023800	Weak transcription	Spleen	Spleen
35	chr8:99016000-99017400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr8:99016400-99017800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr8:99016400-99021400	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr8:99016400-99021400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr8:99016600-99018800	Genic enhancers	Fetal Stomach	stomach
40	chr8:99016600-99019800	Enhancers	Brain Substantia Nigra	brain
41	chr8:99016600-99020600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr8:99016600-99021400	Enhancers	Brain Angular Gyrus	brain
43	chr8:99016600-99021400	Enhancers	Brain Anterior Caudate	brain
44	chr8:99016800-99017800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
45	chr8:99016800-99017800	Enhancers	Placenta	Placenta
46	chr8:99016800-99018000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr8:99016800-99018400	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr8:99016800-99018800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr8:99016800-99023000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr8:99017000-99017800	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links