Variant report

Variant	rs187590770
Chromosome Location	chr18:39520984-39520985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv431979	chr18:39255558-39696452	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1066029	chr18:39322920-39623625	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv543686	chr18:39322920-39623625	Strong transcription Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv909566	chr18:39327962-39688452	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	esv34153	chr18:39398768-39872265	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv909567	chr18:39470190-39652939	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv2268	chr18:39487042-39531721	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	nsv909568	chr18:39491873-39768746	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
12	nsv960225	chr18:39520220-39521420	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39515800-39521200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr18:39516000-39521400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr18:39516000-39521600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr18:39517400-39522400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr18:39517600-39521400	Enhancers	HSMMtube	muscle
6	chr18:39517600-39521400	Enhancers	NHLF	lung
7	chr18:39517600-39521400	Enhancers	Osteobl	bone
8	chr18:39517800-39522800	Weak transcription	GM12878-XiMat	blood
9	chr18:39518000-39521400	Enhancers	HSMM	muscle
10	chr18:39518000-39521600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr18:39518200-39521400	Enhancers	NHDF-Ad	bronchial
12	chr18:39518600-39521400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr18:39519000-39521400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr18:39519400-39521200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr18:39519400-39521400	Enhancers	Placenta Amnion	Placenta Amnion
16	chr18:39520000-39521000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr18:39520000-39521200	Enhancers	HMEC	breast
18	chr18:39520200-39521000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr18:39520200-39521000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr18:39520200-39521000	Enhancers	NHEK	skin
21	chr18:39520200-39521200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr18:39520200-39521200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr18:39520200-39521200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr18:39520200-39521400	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr18:39520200-39521400	Flanking Active TSS	NH-A	brain
26	chr18:39520400-39521000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr18:39520400-39524200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr18:39520600-39521000	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr18:39520800-39521200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr18:39520800-39521600	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr18:39520800-39523400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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